Single Cell & Spatial Transcriptomics Analysis
June 26 - July 14, 2025
Key Dates
Application Deadline: March 15th, 2025 CLOSED
Arrival: June 26th by 6pm EST
Departure: July 14th around 12pm EST
CSHL Courses are intensive, running all day and often including evenings and weekends; students are expected to attend all sessions and reside on campus for the duration of the course.
Instructors
Luciano Martelotto, Adelaide Centre for Epigenetics | Adelaide University, Adelaide, Australia
Nicholas Navin, MD Anderson Cancer Center, Houston, TX
Julea Vlassakis, Rice University, Houston, TX
See the roll of honor - who's taken the course in the past.
The 2025 Single Cell & Spatial Transcriptomics Analysis Course is no longer taking applications.
The goal of this two-week course is to teach students cutting-edge wet-lab approaches for single cell analysis, and to provide familiarity with basic bioinformatic approaches to single cell data. Modules of the course will be taught by scientists with expertise in distinct areas of single cell analysis.
Topics:
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Droplet-based single cell RNA-seq using RNA Flex Technology.
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Single cell Imaging using Single cell Transcriptomics And Multimodal Profiling though imaging (STAMP) using Xenium Technology.
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Spatial Transcriptomics of tissues using Visium HD
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Single-Cell Western blot
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Single-Cell Mass Spectrometry
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Photoactivatable probes
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Introduction to Bioinformatics (R/Python)
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Single-Cell and Spatial Transcriptomics Bioinformatics
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and more
2025 Speakers and Module Leaders Include
Kimberly Aldinger, Seattle Children's Hospital, Seattle, WA
Kamila Belhocine, 10x Genomics, Pleasanton, CA
Elise Curtois, The Jackson Laboratory, Farmington, CT
James Eberwine, University of Pennsylvania, Philadelphia, PA
Anna Elz, The Fred Hutchinson Cancer Center, Seattle, WA
Sara Fernandez, New York Genome Center, New York, NY
Andrea Gardner, University of Texas at Austin, Austin, TX
Lana Garmire, University of Michigan, Ann Arbor, MI
Christopher Mason, Weill Cornell Medicine, Brooklyn, NY
Melanie Masuda, ScaleBio, San Diego, CA
Ajit Nirmal, Brigham and Women's Hospital, Boston, MA
Jiwoon Park, Weill Cornell Medicine, New York, NY
Jasmine Plummer, St. Jude’s Research Hospital, Memphis, TN
Elena Romanova, University of Illinois, Urbana, IL
Stanislav Rubakhin, University of Illinois at Urbana-Champa, Urbana, IL
Savas Tay, The University of Chicago, Chicago, IL
Major support for this course is provided by the Eunice Kennedy Shriver National Institute of Child Health & Human Development of the National Institutes of Health.
Additional funding provided by Howard Hughes Medical Institute.
We would like to acknowledge the following companies that provided invaluable equipment support:
10x Genomics, Agilent Technologies, Calibre Scientific, Cell Microsystems, Curio Bioscience, Eppendorf North America, Hamamatsu Photonics, Logos Biosystems, INC,, Molecular Devices, ProteinSimple, Inc, Sutter Instrument Company, Thermo Fisher Scientific
Cost (including board and lodging): $5,555 USD
No fees are due until you have completed the full application process and are accepted into the course.
Students are further expected to bring a laptop computer with specified bioinformatic packages pre-installed.
Before applying, ensure you have:
- Personal statement/essay;
- Letter(s) of recommendation;
- Curriculum vitae/resume (optional);
- Financial aid request (optional).
More details.
If you are not ready to fully apply but wish to express interest in applying, receive a reminder two weeks prior to the deadline, and tell us about your financial aid requirements, click below: