Single Cell & Spatial Transcriptomics Analysis
June 26 - July 14, 2025
Key Dates
Application Deadline: March 15th, 2025
Arrival: June 26th by 6pm EST
Departure: July 14th around 12pm EST
CSHL Courses are intensive, running all day and often including evenings and weekends; students are expected to attend all sessions and reside on campus for the duration of the course.
Instructors
Luciano Martelotto, Adelaide Centre for Epigenetics | Adelaide University, Adelaide, Australia
Nicholas Navin, MD Anderson Cancer Center, Houston, TX
Julea Vlassakis, Rice University, Houston, TX
Huaiying Zhang, Carnegie Mellon University, Pittsburgh, PA
2025 Teaching Assistants
Mandovi Chatterjee, Harvard Medical School, Boston, MA
Shuoshuo Wang, Beth Israel Deaconess Medical Center, Boston
Kellie Wise, The University of Adelaide, Adelaide, Australia
2025 Computational Assistants
tba
The goal of this two-week course is to teach students cutting-edge wet-lab approaches for single cell analysis, and to provide familiarity with basic bioinformatic approaches to single cell data. Modules of the course will be taught by scientists with expertise in distinct areas of single cell analysis.
Topics:
-
Droplet-based single cell RNA-seq using ClonMapper barcoded cells
-
Spatial Transcriptomics of tissues using Visium HD (hands-on), Xenium Technology (demo)
- Single cell Western blot
- Photoactivatable Single cell probes
- Single cell mass spectrometry
- Introduction to Bioinformatics (R/Python)
-
Single Cell and Spatial omics Bioinformatics analysis
- and more
2024 Speakers and Module Leaders Included:
Andrew Adey, Oregon Health & Science University, Portland, OR
Amy Brock, University of Texas, Austin, TX
David Chenoweth, University of Pennsylvania, Merion Station, PA
Iain Clark, UC Berkeley, Berkeley, CA
James Eberwine, University of Pennsylvania, Philadelphia, PA
Rong Fan, Yale University, Cheshire, CT
Jasmine Plummer, St. Jude’s Research Hospital, Memphis
Peter Sims, Columbia University, New York
Itai Yanai, NYU Langone, New York, NY
Major support for this course is provided by the Eunice Kennedy Shriver National Institute of Child Health & Human Development of the National Institutes of Health.
Additional funding provided by Howard Hughes Medical Institute.
We would like to acknowledge the following companies that provided invaluable equipment support:
10x Genomics, Agilent Technologies, Calibre Scientific, Cell Microsystems, Curio Bioscience, Eppendorf North America, Hamamatsu Photonics, Logos Biosystems, INC,, Molecular Devices, ProteinSimple, Inc, Sutter Instrument Company, Thermo Fisher Scientific
Cost (including board and lodging): $5,555 USD
No fees are due until you have completed the full application process and are accepted into the course.
Students are further expected to bring a laptop computer with specified bioinformatic packages pre-installed.
Before applying, ensure you have:
- Personal statement/essay;
- Letter(s) of recommendation;
- Curriculum vitae/resume (optional);
- Financial aid request (optional).
More details.
If you are not ready to fully apply but wish to express interest in applying, receive a reminder two weeks prior to the deadline, and tell us about your financial aid requirements, click below: