Presenting Author |
Abstract Title |
Talk/Poster |
Aggarwal, Manu |
Inferring transition probabilities and cellular trajectories from single-cell RNA sequencing |
poster |
Aihara, Gohta |
Rasterization framework for scalable spatially resolved omics data analysis |
poster |
Ak, Cigdem |
EpiConfig—Multimodal topic modeling for single-cell multiomics |
flash talk & poster |
Aladyeva, Ekaterina |
Spatial transcriptomics of human hippocampal brain tissues with active lesion in secondary progressive multiple sclerosis |
poster |
Alakhdar, Amira A |
Apoptotic processes direct the matrix-induced fibrogenic conversion of aged muscle stem cells |
poster |
Alemayehu, Amare Eshetu |
Ultra-high resolution spatial transcriptomics reveals HIV-induced immune dysfunction in tissue microenvironment |
poster |
Alessandri, Luca |
SC-Admine—Sparsely connected autoencoder for comprehensive data mining in single-cell RNAseq |
poster |
Allbritton, Nancy |
Single-cell assay systems—Beyond genomics and proteomics |
talk |
An, Min Ho |
Exploring keratinocyte differences in central and peripheral vitiligo lesions with single-cell RNA analysis |
poster |
Andersen, Chris |
De novo inference of cell signaling from multiplexed single-cell imaging data |
poster |
Annepureddy, Laasya Devi |
Identifying transcription factors that regulate epithelial cellular functions in breast milk using single-cell multiomic analysis |
poster |
Arbabi, Keon |
Transcriptomic pathology of neocortical microcircuit cell types across psychiatric disorders |
poster |
Ates-Kalkan, Seda |
Genetic lineage tracing analysis of neuromesodermal progenitor at single cell level uncovers novel contributions to trunk neural crest derivatives in zebrafish embryos |
poster |
Atta, Lyla M |
Gene count normalization in single-cell imaging-based spatially resolved transcriptomics |
poster |
Attenborough, Teresa |
Challenges, surprises, and uncharacterised genes—Single cell RNA sequencing in Schistosoma mansoni |
poster |
Bafna, Mihir |
CLARIFY—Cell-cell interaction and gene regulatory network refinement from spatially resolved transcriptomics |
poster |
Battistella, Mattia |
Challenging the hypothesis of a neurodevelopmental component in Huntington's disease by single-cell RNA sequencing analysis of human fetal samples |
poster |
Becker, Timothy J |
Associating intergenic genomic variation with locally integrated scATAC and scRNA |
poster |
Benthal, Joseph T |
Gene regulatory network analysis via single cell multiomics of the developing Mus musculus enteric nervous system |
poster |
Bhaskaran, Jahnavi |
Single-nucleus multiomic analysis of human spermatogonia dynamics |
talk |
Booeshaghi, Ali Sina |
A machine-readable specification for genomics assays |
flash talk & poster |
Boufaied, Nadia |
MYC drives aggressive prostate cancer by disrupting transcriptional pause release at androgen receptor targets |
poster |
Brand, Joshua |
Integrated scRNA-Seq analysis identifies fallopian tube myeloid cell alteration associated with high-grade serous ovarian cancer progression |
poster |
Budhathoki, Yogesh |
Building a single cell atlas for osteosarcoma |
poster |
Cai, Jinpu |
Cell-ontology-aware marker identification and stratification with TAMER |
poster |
Cannon, Matthew V |
Identification of tumor cells in mixed-sample scRNAseq datasets using genetic variants |
poster |
Cao, Junyue |
The panoramic view of organismal aging at single-cell resolution |
talk |
Chan, Kwan Pui |
B cell repertoire differences induced by wild-type measles virus compared to live-attenuated measles vaccine |
poster |
Chang, Ting-Ya |
Functional enhancer identification at sex-biased, growth hormone-responsive open chromatin regions in mouse liver |
poster |
Chari, Tara |
Stochastic modeling for mapping biophysical effects of genetic and environmental perturbation |
talk |
Chen, Tianmeng |
Multi-modal single-cell sequencing deconvolutes outcome-specific immune responses in trauma patients |
poster |
Chin, Christopher R |
Single cell multiomics predicts germinal center B cell fate |
poster |
Chitra, Uthsav |
Mapping spatial gene expression gradients with interpretable deep learning |
poster |
Clark, Kevin D |
Deciphering the function of RNA modifications in the central nervous system and single cells—Strategies in sample preparation, separations, and mass spectrometry |
poster |
Clifton, Kalen |
Alignment of spatial transcriptomics data using diffeomorphic metric mapping |
talk |
Coskun, Ahmet F |
Subcellular spatial omics decode RNA and protein networks and neighborhoods in single cells |
poster |
Cotrim Chaves, Rodrigo |
High-throughput nucleic acid cytometry with hydrogel beads |
poster |
Daccache, Joseph |
Decoding epithelial inflammatory memory using single cell multiomics |
poster |
Das, Sankha Subhra |
Human adipocyte subtypes and their expression profiles in subcutaneous adipose tissue differ based on liver fat amount and adipocyte characteristics |
poster |
Daswani, Rishika R |
Measurement of single cell and spatial multiomics within the brains of rats following fentanyl self-administration |
poster |
deMello, Andrew |
Microfluidic flow cytometry for blood-based diagnostics |
talk |
Dey, Siddharth S |
Photo-sensitive barcodes combined with topologically imposed light gradients enable spatially-resolved single-cell transcriptomics and epigenomics |
talk |
Dhingra, Priyanka |
Cellular and molecular impact of the melanocortin receptor agonist PL8177 in dextran sulfate sodium-induced colitis in rats |
poster |
Doratt, Brianna |
Mild/asymptomatic COVID-19 in unvaccinated pregnant mothers impairs neonatal immune responses |
poster |
dos Santos Peixoto, Rafael |
Multi-scale characterization of cell-type spatial relationships in spatially resolved omics data |
poster |
Duan, Xiaoyu |
Deep learning cellular dynamics from single-cell RNA sequencing |
poster |
Ergen, Can |
Comprehensive single-cell profiling of immune cells across the human lifespan reveals expression signatures of aging and tissue specificity |
talk |
Ergen, Can |
Consensus prediction of cell type labels with popV |
poster |
Falk, Ariel |
Patterns of aging across mouse tissues using global coordination level (GCL)—Insights from Tabula Muris Senis Dataset |
poster |
Feng, Site |
Single-cell multi-omics analyses of colon mucosa reveal immune cell profiles of ulcerative colitis |
poster |
Ferrari, Ivan |
Improved NK cell markers from single cell RNA-seq of PBMC populations by the new ROC-driven combiroc R package |
poster |
Franz, Emily |
Trabectedin augments oncolytic herpes simplex virotherapy by reducing antiviral barriers to viral spread in pediatric bone sarcoma models |
flash talk & poster |
Fu, Yuntian |
Single-cell landscape of tumor-infiltrating T cells in glioblastoma |
poster |
Ge, Xiaowei |
SRS-FISH—Paving the way for single cell genotypic and phenotypic analysis |
talk |
Gironella Torrent, Marta |
Single-cell quantification of secretory function and transcriptome delineates β-cell failure in type 2 diabetes |
flash talk & poster |
Go, Yunjin |
HepScope—A new gene set identifying malignant hepatocytes at single-cell level |
poster |
Goggin, Sarah |
A hyperparameter-randomized ensemble approach for robust clustering across diverse single-cell datasets |
poster |
Gomez, Nicholas |
Topic modeling of epithelial to mesenchymal transition (EMT) in human iPSCs reveals dynamic gene expression substructure |
flash talk & poster |
Gu, Weihong |
Single-cell atlas of the small intestine throughout the human lifespan demonstrates unique features of fetal immune cells |
flash talk & poster |
Guo, Xiaofeng |
Transcriptomic characterization of preoptic area in homeostatic sleep controls using single-nucleus RNA-sequencing |
poster |
Haag, Natja |
Deciphering pain mechanisms with single cell resolution |
poster |
Hamidzada, Homaira |
Single cell transcriptomics reveals a modular macrophage structure conserved across organs and species |
flash talk & poster |
Harens, Hannah |
Multimodal sample preparation for RNA and proteins in single cells |
poster |
Hassanin, Ismail El-Shimy A |
Deficient IFN response, excessive neutrophil reactivity, and cilia impairment distinguish RSV from SARS-CoV-2 infection in infants |
poster |
He, Jian |
Leveraging single-cell RNA-seq for uncovering naïve B cells associated with better prognosis of hepatocellular carcinoma |
poster |
Holmes, Austin |
Enhanced single cell DNA methylation analysis using combinatorial sequencing |
poster |
Hu, Zhiyuan |
Reconstructing gene regulatory networks underlying neural crest cell fate decisions using single-cell multiomics |
talk |
Hughes, Jason J |
Quantitative RNA-FISH probe design |
poster |
Imafuku, Tadashi |
Development of the section-based transcriptomics analysis without enzymatic treatment for single-cell dissociation |
poster |
Jiang, Jenny |
High-throughput and high-dimensional profiling of antigen-specific T cells |
talk |
Jiang, Jialong |
D-SPIN constructs gene regulatory network models from multiplexed scRNA-seq data revealing organizing principles of cellular perturbation response |
flash talk & poster |
Johnson, Courtney M |
scRNA sequencing reveals differential gene expression of cancer-associated fibroblast markers in early vs. late-stage mycosis fungoides disease |
talk |
Jonsson, Vanessa D |
CITA—A pan-cancer multi-omic immune T cell atlas and antigen specificity database for cancer immunotherapy |
talk |
Kafader, Jared |
scPiMS—A novel strategy for profiling intact proteoform signals from single cells |
talk |
Karakose, Esra |
Single cell RNA-seq analysis of regenerative drug-treated human pancreatic Islets identifies a cycling alpha cell population as key beta cell progenitors |
poster |
Karlsson, Filip |
Molecular pixilation—Spatial proteomics on single-cells by sequencing |
flash talk & poster |
Keer, Frances R |
Stitch-seq—A facile and high-throughput perturbation sequencing method |
poster |
Khan, Teka |
Syncytiotrophoblast subtypes revealed by single nucleus RNA sequencing, immunocytochemistry and fluorescence activated nuclear sorting of trophoblast derived from primed-type human pluripotent stem cells |
poster |
Ko, kyungdae.ko@nih.gov |
A deep learning adversarial autoencoder with dynamic batching has superior performance in denoising scRNA-seq data |
poster |
Koumadorakis, Dimitrios |
Decoding the antigen-presenting stroma landscape of lung tumors |
poster |
Krishnaswamy, Smita |
Multiscale diffusion geometry for (deep) learning of graphs, manifolds, and flows |
talk |
Kuwabara, Takayoshi |
Application of scRNA-seq technology to explore the evolutionary dynamics of Kenyon cell types, which comprise the higher-order brain center, in Hymenoptera |
poster |
Lakra, Priya |
Smarca4 regulated transcription factor activity in germinal center B-cells |
poster |
Lam, Gabriel |
Profiling splicing isoforms in single cells in aging models |
poster |
Lam, Trinh |
A synchronized barcoded vacuum-driven microfluidic device for single-cell ATAC sequencing |
flash talk & poster |
Large, Christopher R |
Combining the conserved and defined developmental lineage of the Caenorhabditis nematode embryo with single-cell resolution to study the evolution of cellular gene expression |
flash talk & poster |
Laub, Shannon |
Single-cell CRISPRi screen maps candidate regulatory Alzheimer’s variants to target genes and cellular pathways in a human microglial cell line |
flash talk & poster |
Leduc, Andrew |
Droplet sample preparation enables protein covariation across single cells |
poster |
Lee, Chen-Yu |
Single-cell spatial proteomics identifies intraglomerular myeloid cells in membranous lupus nephritis |
poster |
Lee, Jaehyun |
Decoding Parkinson's disease—Single-cell insights into region-specific and age-related genetic responses to α-synuclein oligomer exposure |
poster |
Lee, Jiseok |
Deciphering altered gene networks in schizophrenia using single-cell perturbation and transcriptomics (CROP-seq) in the developing mouse brain |
poster |
Lee, Sanghoon |
S100A11 mediates recruitment of tumor-associated macrophages to epithelial cancer cells in the microenvironment of ER+ breast cancer—Insights from single-cell analysis |
poster |
Leviyang, Sivan |
Quantifying the clustering resolution of single cell RNA-seq |
poster |
Li, Siran |
Associating cancer and stromal genomes with transcriptomes by high-throughput single-cell hybrid sequencing |
talk |
Li, Xiang |
Real-time mRNA enrichment in single-nuclei RNA data by selective sequencing |
talk |
Lian, Qiuyu |
Total-mRNA-aware comparative analysis for droplet-based single cell sequencing |
poster |
Liao, Tzu-Chieh |
Single-cell multi-omics reveals molecular dynamics of type 3 innate lymphoid cell plasticity during intestinal Salmonella typhimurium infection |
poster |
Lim, Hansol |
Transcriptional, anatomical and functional divergence in BLA neurons in controlling emotional valence behaviors |
poster |
Lingatlu, Sidarth |
Cracking the code without coding—Assessing scRNA-seq cell type annotation using AI and data integration |
poster |
Liu, Shiwei |
Single-nucleus RNA-seq analysis unveils sex/APOE-specific and cell type-specific transcriptional signatures in Alzheimer’s disease |
poster |
Liu, Zian |
Imputation approaches and quality standards for single-cell epigenetic age predictions |
poster |
Loske, Jennifer |
Deciphering molecular effects of triple therapy in children with cystic fibrosis by single-cell transcriptomics |
poster |
Ma, Cong |
Inferring spatial tumor evolution and allele-specific copy number aberrations in spatially resolved transcriptomics data |
talk |
Ma, Xiao |
Single-cell RNA sequencing reveals enhanced endothelial differentiation via ETV2 overexpression during murine embryogenesis |
poster |
MacLean, Adam L |
Gene regulatory network inference with popInfer reveals dynamic regulation of hematopoietic stem cell quiescence upon diet restriction and aging |
poster |
Madler, Sophia C |
SPARCS, a platform for genome-scale CRISPR screening for spatial cellular phenotypes |
talk |
Mancera Miranda, Laura M |
Phenotypically heterogeneous loci in the plant pathogen Pseudomonas syringae |
poster |
McConnell, Michael |
Recurrent sites of somatic mosaicism in human neurons |
talk |
McEwen, Sophie |
Exploring the differential host response to SARS-CoV-2 variants in pediatric patients |
poster |
Mellis, Ian A |
Prevalence of and gene regulatory constraints on transcriptional adaptation in single cells |
flash talk & poster |
Miao, Zhen |
Model-based compound hypothesis testing for snATAC-seq data with PACS |
talk |
Montoya Mira, Jose Luis |
An integrated, efficient, and scalable single-cell sequencing platform leveraging engineered ultrasound responsive nanowells |
flash talk & poster |
Mossi Albiach, Alejandro |
Glioblastoma is spatially organized by neurodevelopmental programs and a glial-like wound healing response |
poster |
Murza, Dominykas |
Development of droplet-based single-cell small RNA sequencing assay |
poster |
Najafabadi, Hamed S |
A unified model for interpretable latent embedding of multi-sample, multi-condition single-cell data |
poster |
Navab, Roya |
Spatially defined co-culture model of non-small cell lung cancer (NSCLC) organoids and cancer-associated fibroblasts to investigate phenotypic heterogeneity |
poster |
Niemoeller, Christoph |
Development of scPICO—A high-sensitivity single cell antibody assay with dPCR readout for quantitative analysis of 4EBP1 protein phosphorylation in drug-perturbed cellular populations |
flash talk & poster |
Nouri, Nima |
Target identification by comparative analysis of gene association networks using single cell RNA sequencing data |
poster |
Okada, Hiroyuki |
Subcellular sampling and sequencing by iSCseq connects transcriptomics with morphological, physical, and physiological findings in osteoimmunology |
talk |
Olsen, Timothy |
Scalable co-sequencing of RNA and DNA from individual nuclei |
talk |
Orvis, Joshua D |
The gene Expression Analysis Resource (gEAR) Portal—Making single-cell analysis and multi-experiment visualization accessible |
flash talk & poster |
Osmanbeyoglu, Hatice U |
Single-cell analysis reveals the stromal dynamics and tumor-specific characteristics in the microenvironment of ovarian cancer |
poster |
Osmanbeyoglu, Hatice U |
Spatial landscape of malignant pleural and peritoneal mesothelioma tumor immune microenvironment |
poster |
Osmanbeyoglu, Hatice U |
STAN, a computational framework for inferring spatially informed transcription factor activity networks |
poster |
Osmani, Lais |
Investigating the functional heterogeneity of monocytes and macrophages in systemic lupus erythematosus |
poster |
Paddock, Lucinda |
Intravesical BCG induces epigenetic changes in hematopoietic stem and progenitor cells that drive the anti-tumor immune response against bladder cancer |
poster |
Paek, Seung-Jun |
Interplay of HBV-Infected tumor cells on the fibrotic microenvironment in hepatocellular carcinoma by single-cell RNA sequencing |
poster |
Page, Nicole M |
Single-cell profiling of Anopheles gambiae spermatogenesis to identify novel regulatory elements for mosquito control |
poster |
Park, Soon Sang |
Cellular senescence drives spatial evolution in colorectal cancer |
poster |
Passalacqua, Michael J |
Leveraging coexpression to improve cross-species single cell integration in plants |
poster |
Patikas, Nikolaos |
Harmony powers robust integration of single-cell data at scale |
poster |
Pham, Nhu-An |
Mutant EGFR lung adenocarcinoma PDX model of osimertinib-induced drug tolerant persister is sensitized with an epigenetic modulator |
poster |
Polonsky, Michal |
Deciphering cellular interactions in acute kidney injury using spatial transcriptomics |
poster |
Poo, Haryoung |
Poly-γ-glutamic acid/Alum adjuvanted pH1N1 vaccine-immunized aged mice exhibit a significant increase in vaccine efficacy with a decrease in age-associated CD8+ T cell proportion in splenocytes |
poster |
Prazanowska, Karolina |
An integrated single-cell transcriptomic dataset for non-small cell lung cancer |
poster |
Preka, Efthalia |
Long-term microglia dynamics in the mouse hippocampus following cranial irradiation |
poster |
Qiao, Qi |
Integrated single cell analysis shows chronic alcohol drinking disrupts monocyte differentiation in the bone marrow niche |
poster |
Qiao, Zhen |
Population-scale single-cell transcriptomics of clonal haematopoiesis |
poster |
Quevedo, Laura |
Targeting the tumor microenvironment by Duvelisib in peripheral T-cell lymphomas |
poster |
Quinn, Katelynn D |
Single-cell DNA sequencing analysis of AML clones with an early signaling mutation show development of a novel immunophenotype |
poster |
Rajasekaran, Bhavna |
A deep learning based quantitative framework for investigating spatiotemporal regulation of actin microridge patterns |
poster |
Rajendran, Ashmitha |
Identification of pediatric brain cancer neurodevelopmental origins using spatiotemporal landscapes |
poster |
Ranade, Nissim |
Identifying tumor sub populations in low coverage single cell data |
poster |
Reed, Jason |
Single cell biomass tracking proves that tumor cells can escape from therapy-induced senescence |
poster |
Reed, Xylena |
Building a single cell multiome ATAC + expression atlas in human frontal cortex |
poster |
Rozenwald, Michal |
Mapping protein-DNA interactions with DiMeLo-seq |
poster |
Ruchiy, Yana |
Genomic analysis of single-cell data allows the identification of tumour evolution culprits in medulloblastoma |
poster |
Sashittal, Palash |
ConDoR—Tumor phylogeny inference with a copy-number constrained mutation loss model |
flash talk & poster |
Schippel, Natascha N |
Single cell analysis of human early erythroid progenitor heterogeneity |
poster |
Schlueter, Hannah |
Detecting lineage-related gene expression patterns |
talk |
Schmidt, Michael J |
GeTMoR—Simultaneous genomic, transcriptomic, and morphological profiling of rare single cells |
poster |
Sharif, Behrang |
Exploring hierarchical linear and multilevel statistical modeling for biological inferences from integrated single nucleus transcriptomics of human dorsal root ganglia |
poster |
Shim, Jae Hyun |
Single-cell resolution analysis of GPC3 and S100A10 in human liver tumor microarrays through automated cellular analysis |
poster |
Sienkiewicz, Karolina M |
Changes in circulating cell-free DNA as a biomarker of immune response to short-duration spaceflight |
poster |
Slavov, Nikolai |
Biological and technological frontiers for single-cell proteomics |
talk |
Snyder, Grace A |
Single-cell sequencing of novel immune cells in an early-diverging metazoan |
poster |
Thakral, Deepshi |
Comparative single cell whole transcriptome analysis of CD34 positive versus CD34 negative leukemic stem cells in acute myeloid leukemia |
poster |
Torous, William |
Visualizing scRNA-Seq data at population scale with GloScope |
talk |
Tremblay, Simon |
Cascading binomial classification framework for supervised scRNA-seq cell type classification |
poster |
Tsubosaka, Ayumu |
Integrated single-cell RNA sequencing and spatial transcriptomic analyses of human normal and metaplastic gastric mucosa |
poster |
Uhler, Caroline |
Causal representation learning—A proposal |
talk |
Volteras, Dimitrios |
Scalable inference reveals global transcription regulation from time-resolved single-cell RNA-sequencing |
flash talk & poster |
Wang, Siyuan |
A genome-wide single-cell 3D genome atlas of lung cancer progression |
talk |
Warrier, Tushar |
Enhancer transposition at single-cell resolution—A tool to decipher enhancer kinetics and transcriptional regulation in cancer genomes |
flash talk & poster |
Wei, Yulong |
Single-cell epigenetic, transcriptional, and protein states of HIV-infected cells |
flash talk & poster |
Weinstein, Joshua A |
DNA microscopy in three dimensions |
poster |
Wekhande, Siddarth |
Combinomics—Multiomic single cell processing and analysis pipeline |
poster |
Wong, Michelle E |
Tracking the spatiotemporal dynamics of CD4+ T cell immune responses during HIV infection using single-cell multiomic profiling |
poster |
Woods, Mae L |
Single cell pathway analysis isolates viral and tumor specific T cell receptors in cells with low activation marker transcript abundance |
poster |
Xin, Hongyi |
Cross-modal, subtype-aware cell type clustering and classification in single-cell sequencing |
poster |
Xue, Angli |
Population-scale single-cell transcriptomics reveals genetic associations with intra-individual variability of gene expression |
flash talk & poster |
Xue, Tianchun |
Evaluating methods to extract genome structure information from single cell Hi-C data |
poster |
Yardimci, Galip G |
Robust CNV detection using single-cell ATAC-seq |
poster |
Yokoyama, Masataka |
Organ-specific transcriptional regulations of endothelial cells to aging and obesity stress |
poster |
Yu, Zhijun |
Single cell technologies decipher the heterogeneity of colorectal tissue |
poster |
Yuan, Qiuyue |
Continuous lifelong learning for modeling of gene regulation from single cell multiome data by leveraging atlas-scale external data |
poster |
Yunusov, Dinar |
Accurate quantification of multi-mapping reads in single-cell RNA-seq with STARsolo |
flash talk & poster |
Zaragoza, Michael V |
Single-cell transcriptomics of human iPSC differentiation to cardiomyocytes reveal cell type and lineage-specific molecular mechanisms of LMNA-related dilated cardiomyopathy |
poster |
Zhang, Pengfei |
Mapping embryonic mouse lung development using single-cell and spatial transcriptomics |
poster |
Zhang, Tianran |
Uncover molecular mechanisms of novel therapies for diabetic kidney disease by single-cell transcriptomics |
poster |
Zhang, Xinyi |
Graph-based autoencoder integrates spatial transcriptomics with chromatin images and identifies joint biomarkers for Alzheimer’s disease |
flash talk & poster |
Zhang, Xiuwei |
scMultiSim—Simulation of single cell multi-omics and spatial data guided by cell-cell interactions and gene regulatory networks |
flash talk & poster |
Zhang, Ziqi |
CeSpGRN—Inferring cell-specific gene regulatory networks from single cell multi-omics and spatial data |
poster |