|
Presenting Author |
Abstract Title |
Talk/Poster |
|
Alban, Tyler J |
CITE-seq identifies unique myeloid derived suppressor cells (MDSCs) population signatures in glioblastoma patients that do not respond to immune checkpoint inhibition |
poster |
|
Anand, Praveen |
Single cell RNA-seq reveals developmental plasticity with coexisting oncogenic states and immune evasion programs in ETP T-ALL |
poster |
|
Anderson, Courtney M |
Incorporation of spatial mapping by a multiplex in situ hybridization technology into single cell RNA sequencing workflows |
poster & flash talk |
|
Bansal, Nidhanjali |
Sensitivity of gene fusion detection from high-throughput SMART-seq chemistry on the ICELL8 cx System |
poster |
|
Barberan Soler, Sergio |
Highly accurate small-RNA sequencing of single cells (RealSeq-SC) |
poster |
|
Barnes, Spencer D |
Single-cell RNA sequencing identifies fibro-inflammatory perivascular stromal cells controlling adipose tissue inflammation in obesity |
poster |
|
Bell, Claire |
Simultaneous capture of DNA and mRNA from single mammalian cells in droplets |
talk |
|
Best, Tyler K |
The NIH Common Fund, Human Biomolecular Atlas Program (HuBMAP)—Building a framework for mapping the human body |
poster |
|
Blibaum, Ash |
Mercury—High quality visualization and reproducible exploratory analysis of scRNA-seq data |
poster |
|
Blibaum, Ash |
ProtoCell—Automated identification of cell types in single-cell RNA-seq data using prototypical neural networks |
poster & flash talk |
|
Bolduc, Nathalie |
Unprecedented sensitivity with SMART-Seq single cell technology |
poster |
|
Brase, Logan |
Identification of transcriptional profiles of the MS4A gene cluster and their association with Alzheimer's disease |
poster |
|
Cai, Long |
seqFISH+—in situ transcriptome profiling |
talk |
|
Cao, Chen |
Comprehensive single-cell transcriptome lineages of a proto-vertebrate |
talk |
|
Cao, Guoshuai |
Lattice light-sheet microscopy multi-dimensional analyses (LaMDA) of T-cell receptor dynamics predict T-cell signaling states |
poster |
|
Chatterjee, Deeptiman |
Constructing a comprehensive transcriptomic atlas of developing follicular epithelial cells in adult Drosophila ovary |
poster & flash talk |
|
Chen, Xiaoyin |
Shared and specific long-range projections across transcriptionally-defined neuronal subtypes revealed by in situ barcode sequencing |
talk |
|
Chialastri, Alex J |
Simultaneous high-throughput single-cell sequencing of DNA methylation, chromatin accessibility and mRNA from the same cell enables marker-free generation of cell type-specific epigenetic landscapes |
poster & flash talk |
|
Davila-Velderrain, Jose |
Integrative single-cell analysis reconstructs the quantitative cell state landscape of the human developing cortex |
talk |
|
DePasquale, Erica A |
DoubletDecon—Deconvoluting doublets from single-cell RNA-sequencing data |
poster |
|
Dey, Siddharth S |
Simultaneous quantification of protein-DNA contacts and transcriptomes in single cells |
talk |
|
Dhuppar, Shivnarayan |
Investigating central dogma in the context of nuclear architecture and cell cycle at single-cell resolution |
poster & flash talk |
|
Di Chiaro, Pierluigi |
Molecular dissection of cellular heterogeneity in pancreatic adenocarcinoma by transcriptomic profiling |
poster |
|
Dobin, Alexander |
STARsolo—Single-cell RNA-seq data analysis beyond gene expression |
poster & flash talk |
|
Duvall, Eliza |
Single cell transcriptome and chromatin conformation analysis reveal pancreatic hormone lineage decisions |
talk |
|
Eum, Hye Hyeon |
Tumor promoting macrophages prevail in the malignant ascites of advanced gastric cancer |
poster |
|
Feng, Di |
Single Cell Explorer, collaboration-driven tools to leverage large-scale single cell RNA-seq data |
poster |
|
Fischer, Stephan |
How well defined are reference cell types in the brain? |
poster |
|
Ford, Matthew J |
Single cell RNA sequencing reveals developmental origins of mouse oviduct epithelial cell heterogeneity |
poster |
|
Gao, Shouguo |
Comparative single-cell transcriptomic analysis of the hematopoietic system between human and mouse |
poster |
|
Garcia, Hernan G |
Transcriptional control strategies for pattern formation in embryonic development |
talk |
|
George, Nikhil Oommen |
Differential 3’UTR usage along the olfactory bulb neurogenic lineage |
poster |
|
Gerecsei, Tamas |
Novel techniques for probing single cell adhesion and single cell isolation |
talk |
|
Gonzalez-Reiche, Ana S |
Spatiotemporal dynamics of calvarial suture development revealed by integrated analysis of single-cell and whole transcriptome data |
poster |
|
Groves, Sarah |
Network control of phenotypic plasticity in small cell lung cancer |
poster |
|
Gupta, Anushka |
Mapping adipogenesis in humans using single-cell and single-nuclei RNA-sequencing |
poster |
|
Han, Guangchun |
vGATE—An R package to automatically define cell types/states and cell-of-origin for single cell RNAseq data |
poster |
|
Han, Jungmin |
Friend or foe—Missing data imputation in single cell analysis |
talk |
|
Han, Kyung Yeon |
Combined single-cell quantification of genome and transcriptome in breast cancers |
poster |
|
Harris, Benjamin |
Methods and statistics for differential co-expression in single cell RNA sequencing data |
poster |
|
He, Jian |
Single-cell RNA-Seq reveals naïve B cells associated with better prognosis of hepatocellular carcinoma |
poster |
|
Henry, Gervaise |
A cellular atlas of human prostate disease |
poster |
|
Hertel, Laura |
Single-cell transcriptome analysis of CD34+ stem cell-derived myeloid cells infected with human cytomegalovirus |
talk |
|
Hertzano, Ronna |
The gEAR portal—Gene Expression Analysis Resource |
poster |
|
Hill, Matthew C |
Hippo pathway deletion in adult resting cardiac fibroblasts initiates a cell state transition with spontaneous and self-sustaining fibrosis |
poster |
|
Hong, Yourae |
Single cell transcriptome profiling in colorectal cancer reveals tumor heterogeneity and intrinsic tumor cell signatures associated with the consensus molecular subtype |
poster |
|
Horvath, Anelia |
Genetic variation regulatory networks from single cell RNA sequencing |
poster |
|
Hu, Alex K |
Increased T-cell exhaustion in antigen-specific CD8 T-cells from early-onset type 1 diabetic subjects after teplizumab treatment |
poster |
|
Hu, Peng |
Massively parallel, time-resolved single-cell RNA sequencing with scNT-seq |
poster |
|
Iwabuchi, Sadahiro |
Single-cell RNA sequencing identifies the common and unique cell population between in an in vitro and in vivo cultured condition |
poster |
|
Jeney, Csaba |
Homogeneous, single-cell level protein and protein complex detection |
poster |
|
Johnson, Radia M |
Combinatorial single cell analysis to link genotype to phenotype in colorectal cancer |
poster |
|
Jonsson, Vanessa |
Uncovering T cell dynamics over the course of chimeric antigen receptor (CAR) T cell therapy |
talk |
|
Kabeer, Farhia |
Quantifying breast cancer heterogeneity and clonal fitness using single cell timeseries population dynamics |
poster |
|
Kaymaz, Yasin |
A hierarchical random forest approach for cell type projections across single-cell RNAseq datasets |
poster |
|
Keren, Leeat |
Unraveling the tumor immune microenvironment using multiplexed ion beam imaging |
talk |
|
Ko, Kyung Dae |
Computational pipeline to infer the gene regulatory network during cell differentiation from scRNA-seq analysis |
poster & flash talk |
|
Lam, Gabriel |
Cell-type-specific genomics reveals histone modification dynamics in mammalian meiosis |
poster |
|
Lee, Je H |
In situ transcriptome accessibility sequencing (INSTA-seq) reveals in vivo mRNA-protein interactions |
talk |
|
Legant, Wesley |
Lattice light sheet microscopy—Innovations, applications and future directions |
talk |
|
Li, David W |
Oxidative stress-induced KLF4 activates inflammatory response through IL17RA and its downstream targets in retinal pigment epithelial cells |
poster |
|
Li, Siran |
BAG-seq—Copolymerization of nucleic acids into balls of acrylamide gel (BAG) for single-cell DNA/RNA sequencing |
talk |
|
Lim, Wei Keat |
Eliminating spurious correlations from regularized single cell RNA-seq data |
poster & flash talk |
|
Liu, Shiwei |
Optimization of a whole genome amplification method for single Plasmodium falciparum parasite sequencing |
talk |
|
Liu, Yang |
RISC—Robust integration of single-cell RNA-seq datasets with different extents of cell cluster overlap |
poster |
|
Liu, Zhen |
Probing apoptosis signaling proteins in single living cells enables precise efficacy evaluation of anti-cancer drugs |
poster & flash talk |
|
Martelotto, Luciano |
When Frankenstein meets Van Helsing—A workflow for snRNA/ATAC-Seq from the same nuclei prep for 10x Genomics platform |
poster & flash talk |
|
McFaline, Jose L |
Massively multiplexed chemical transcriptomics at single-cell resolution |
talk |
|
Mellis, Ian A |
Perturbation panel profiling identifies transcription factors that enhance directed changes of cell identity |
talk |
|
Menoni, Carmen |
Three dimensional nanoscale molecular imaging by extreme ultraviolet laser ablation mass spectrometry |
talk |
|
Mitroi, Daniel N |
Single nuclei RNA-seq analysis of white matter from human vascular dementia |
poster |
|
Mohammadi, Shahin |
Multi-resolution single-cell state characterization via joint archetypal/network analysis |
poster |
|
Morita, Ritsuko |
The origin and induction processes of hair follicle stem cells |
talk |
|
Musser, Jacob |
Whole-body single-cell RNA sequencing reveals components of elementary neural circuits in a sponge |
talk |
|
Mycko, Marcin |
Transcriptomic analysis of the cell released circulating exosomes reveals biomarkers of the multiple sclerosis activity |
poster & flash talk |
|
Nomura, Seitaro |
Integrative single-cell analysis to dissect heart failure biology |
poster & flash talk |
|
Osmanbeyoglu, Hatice U |
Integrative computational framework for linking cell surface proteins to downstream transcriptional programs in single cells |
poster |
|
Pantoja Angles, Aaron |
Coupling FluidFM technology with multi-omic analyses for understanding the effect of PI5P on chromatin |
poster |
|
Patrick, Ralph |
Decoding the identify and flux of cardiac cells in injury and homeostasis at single-cell resolution |
poster |
|
Peng, Tao |
GLUER—Integrative analysis of multi-omics data at single-cell resolution |
poster |
|
Periwal, Vipul |
Cell lineage inference from Drosophila blastoderm gene expression |
poster & flash talk |
|
Prieto-Vila, Marta |
Single-cell analysis identified a LEF-1 positive drug-resistant subpopulation in luminal subtype of breast cancer cells |
poster & flash talk |
|
Qiu, Wei-Lin |
Defining multistep cell fate decision pathways during pancreatic development at single-cell resolution |
poster & flash talk |
|
Qiu, Xiaojie |
Mapping vector field of single cells |
talk |
|
Ranjan, Bobby |
scConsensus—An approach combining semi-supervised and unsupervised clustering for cell type annotation in single-cell RNA-seq data |
poster & flash talk |
|
Reichart, Daniel |
Single nuclei RNA sequencing in non-diseased and diseased human cardiac tissue |
poster & flash talk |
|
Rose, Kevin P |
Developmental map of otic mesenchyme cell populations of the inner ear |
poster |
|
Sahu, Sombeet K |
Analytical methods to identify tumor heterogeneity and rare subclones in single cell DNA sequencing data from targeted panels |
poster |
|
Salomonis, Nathan G |
A neutropenia-associated transcription factor mutation differentially impacts target genes in the cell-states traversed during granulocyte specification and commitment |
poster |
|
Samaroo, Harry D |
Establishment of human induced pluripotent stem cell derived dopaminergic neurons for in vitro modeling of Parkinson’s disease pathobiology |
poster |
|
Sauka-Spengler, Tatjana |
Reverse engineering of the global neural crest gene regulatory network in vivo |
talk |
|
Schwartz, Gregory W |
TooManyCells identifies rare targeted-therapy-resistant T-ALL cells |
poster |
|
Sharma, Siddhartha M |
Applying single cell analysis techniques to characterize the role of MAIT cells in ulcerative colitis |
poster |
|
Shu, Chang |
Single cell transcriptome mapping reveals cell type-specific effects on gene expression by acute delta9-tetrahydrocannabinol in humans |
poster |
|
Streets, Aaron |
Imaging and sequencing protein-DNA interactions in single cells |
talk |
|
Sun, Yu-Chi |
Gene expression correlates of cortical projections revealed by in situ sequencing |
poster |
|
Susztak, Katalin |
Single-cell transcriptomics of the mouse kidney reveals potential cellular targets of kidney disease |
talk |
|
Takeuchi, Fumihiko |
Accounting for cell type composition in bulk transcriptome and methylome data by using scRNA-seq reference |
poster |
|
Tang, Ming |
A suite of tools for working with single-cell ATAC-seq data |
poster |
|
Varma, Parul |
Single cell genomics identifies cell-type specific molecular changes in precision-models of genetic epilepsies |
poster |
|
Vasdekis, Andreas E |
Cellular noise and metabolism, as a matter of fat |
poster |
|
Vijay, Priyanka |
Benchmarking of normalization and imputation workflows across real and simulated scRNA-seq data. |
poster |
|
Vorholt, Julia |
From single-cell perturbation to subcellular analysis using fluidic force microscopy |
talk |
|
Vystavel, Tomas |
In situ structural biology—Enabled by focused ion beam cryo-lamellae preparation and electron tomography |
poster & flash talk |
|
Wang, Jie |
Cross-species transcriptomic and epigenomic analysis reveals key regulators of injury response and neuronal regeneration in vertebrate retinas |
poster & flash talk |
|
Wang, Linghua |
Multiplex single cell profiling to dissect the tumor immune microenvironment in human cancers |
poster |
|
Wang, Ruiping |
Cell-of-origin analysis of metastatic gastric cancer uncovers the origin of inherent intratumoral heterogeneity and a fundamental prognostic signature |
poster |
|
Wang, Rujin |
SCOPE—A normalization and copy number estimation method for single-cell DNA sequencing |
poster |
|
Wangsanuwat, Chatarin |
A probabilistic framework for cellular lineage reconstruction using single-cell 5-hydroxymethylcytosine sequencing |
poster |
|
Wen, Yanrong |
Tracking EGFR signaling pathway and its crosstalk of apoptosis pathway via multiplexed single cell analysis |
poster |
|
Willie, Elijah S |
To cluster or not to cluster—Assessing clusterability in scRNA-seq data |
poster |
|
Wu, Chi-Yun |
Recovery of genetic and epigenetic heterogeneity using single-cell DNA and methylome sequencing |
poster |
|
Xu, Yichi |
Reconstruction of an invariant lineage in chordate embryogenesis |
talk |
|
Yamawaki, Tracy M |
A comparison of high-throughput single-cell RNAseq methods for profiling immune cells |
poster |
|
Yang, Tao |
AdRoit—Accurate and robust information-theoretic deconvolution from bulk tissue transcriptomes |
poster |
|
Ye, Xiaofei |
Normal and malignant germinal center B cell maps revealed by single-cell RNA sequencing |
poster |
|
Yeo, Jin-Hee |
Reconstruction of tumor-immune microenvironment using a syngeneic CT26 mouse tumor transplant model |
poster |
|
Zhang, Chunling |
Limitations of single cell RNA-seq |
poster |
|
Zhang, Xiuwei |
Simulating multiple faceted variability in single cell RNA sequencing |
poster |
|
Zhao, Juanjuan |
Single nucleus RNA-seq and ATAC-seq survey of cell diversity and functional maturation in postnatal mammalian hearts |
poster |
|
Zhu, Qian |
Giotto, a pipeline for integrative analysis and visualization of single-cell spatial transcriptomic data |
talk |
|
Zhu, Qin |
Single cell analyses reveal developmental bottleneck and two waves of blood progenitor formation from arterial endothelium |
talk |