|
Presenting Author |
Abstract Title |
Talk/Poster |
|
Anderson-Trocme, Luke |
Breaking boundaries—Leveraging continuous models for improved population genetics analyses |
poster |
|
Aw, Alan J |
Gene-ancestry interactions mediate individual heterogeneity in causal effects on complex traits in admixed populations |
poster |
|
Bailey, Nick |
Population genetic simulations of codon sequence evolution at phylogenetic scale |
talk |
|
Barton, John |
Disentangling trait and allele-level selection in temporal genetic data |
poster |
|
Baumdicker, Franz |
Simulation-based neural posterior estimation for population genetics |
poster |
|
Berg, Jeremy J |
Population structure, PCA, and residual confounding in GWAS |
talk |
|
Cai, Jiachen |
Hierarchical Dirichlet processes to study tumor-immune microenvironments in paired single-cell RNA-seq and spatial transcriptomics data |
poster |
|
Cao, Hongyuan |
A new distinguishability criterion for assessing replicability in genomic studies |
poster |
|
Cao, Hongyuan |
Heritability—A counterfactual perspective |
poster |
|
Carlson, Maryn |
Robust detection of specific epistasis |
poster |
|
Chaffee, Ryan K |
Population genetics consequences of habitat fragmentation for the conservation of wild populations |
poster |
|
Chakraborty, Shreya |
Understanding polygenic score portability through the lens of local ancestry |
poster |
|
Charmouh, Anders Poulsen |
Estimating gene conversion tract length and rate from PacBio HiFi data |
poster |
|
Charney, Max |
A deep learning pipeline for pancancer survival modeling and the revealing of SNAPC3 as a biomarker candidate via adaptive feature gating |
poster |
|
Chen, Yang |
Deciphering the contribution of 3D interactions between cis-regulatory elements and promoters to regulate gene expression using graph neural networks |
poster |
|
Chiang, Charleston |
A genealogy-based framework to infer the demographic history, genetic structure, and phenotype association |
poster |
|
Chotai, Meera |
Estimating dominance and selection coefficients from biobank-scale genotypes |
talk |
|
Christ, Ryan |
Variant set distillation |
poster |
|
Cole, Jared M |
A surprising driver of sign bias in allelic effects on complex traits |
poster |
|
Conover, Justin L |
Flexible and biologically motivated genotyping priors improve genotyping accuracy along the autopolyploid-allopolyploid continuum |
poster |
|
Dabi, Amjad |
Evolutionary rescue model informs strategies for driving cancer cell populations to extinction |
poster |
|
Danning, Rebecca |
eTopic-SCORE—An ensemble machine learning method for robust natural language processing of single-cell transcriptomics data |
poster |
|
Degiorgio, Michael |
Efficient detection and characterization of targets of natural selection using transfer learning |
talk |
|
DeHaas, Drew C |
Joint parametric inference of complex demographic history using composite likelihood based on whole-genome genealogy |
talk |
|
Deng, Yun |
Low dimensional embedding of the Ancestral Recombination Graph—A unified framework for population structure and local ancestry |
poster |
|
Diaz-Papkovich, Alex |
Population genetics in the information ecosystem—The social consequences of probabilistic modelling of human populations |
poster |
|
Do, Dat |
Large-sample theory and model selection in admixture models |
poster |
|
Dowell, Robin |
A complete model of RNA polymerase II uncovers unique features of termination |
talk |
|
Dura, Katherine |
Variant effect prediction across multiple experiments with BIRDBath |
poster |
|
Fariello, María Inés |
Detecting selection in admixed populations using hapFLK |
poster |
|
Fortes-Lima, Cesar A |
Spatial modelling and population genomics methods to investigate human history in Africa |
poster |
|
Garg, Prakriti |
Graph representation learning framework for principled analysis of orthologous regulatory regions across more than two species |
talk |
|
Garud, Nandita |
Pervasive selective sweeps within and across human gut microbiomes |
talk |
|
Ghosh, Deepjyoti |
Accounting for recurrent mutation in the SFS of ultra-rare alleles |
poster |
|
Gibbon, Sam R |
Modeling mutation-selection balance in allo- and autotetraploids |
poster |
|
Goldberg, Amy |
An epidemiological-evolutionary model of complex pathogen lifecycle |
poster |
|
Green, Anna G |
Forecasting antibiotic resistance using biophysics and machine learning |
talk |
|
Guez, Jeremy |
Deep learning-augmented models of gnomAD v4 enable estimation of LoF mutational constraint for all human genes |
poster |
|
Gursoy, Gamze |
Quantification of private information leakage from omics data |
talk |
|
Gutenkunst, Ryan N |
GHIST1—The 1st Genomic History Inference Strategies Tournament |
talk |
|
Harris, Mariana |
Removing the need for perfect simulations—Domain-adaptive neural network reveals hard selective sweeps dominate in aDNA |
poster |
|
Hingerl, Johannes |
Scooby—Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution |
talk |
|
Holness, Shevaughn T |
Impact of missing contexts and environmental variables on polygenic risk score calibration |
poster |
|
Hoyt, Stephanie |
TrioBEAST—A Bayesian model for estimating allele-specific expression in familial trios |
poster |
|
Huang, Ziwei |
A resampling-based framework for learning Markov networks from high-dimensional data |
poster |
|
Izarraras-Gomez, Alan |
Inference of the distribution of fitness effects using local genealogies |
talk |
|
Johri, Parul |
A gene-based model of fitness and its implications for genetic variation |
talk |
|
Kang, Yijie |
Designing DNA with tunable regulatory activity using discrete diffusion |
poster |
|
Kanteh, Abdoulie |
Phylodynamic analysis of SARS-CoV-2 infection in The Gambia—A 2-year genomic surveillance investigation |
poster |
|
Kaplan, Noam |
Learning mechanistic probabilistic models of 3D genome organization de novo |
poster |
|
Kerdoncuff, Elise |
Disentangling the role of admixture, founder events and selection—The case of lactase persistence in South Asia |
talk |
|
Kim, Jaehee |
Bayesian phylodynamic inference of population dynamics with dormancy |
talk |
|
Koo, Peter |
Uncertainty-aware genomic deep learning with knowledge distillation |
poster |
|
Korfmann, Kevin |
Coalescence and translation—Leveraging large language models for population genetics |
talk |
|
Kuru, Nurdan |
Leveraging ARGs for population-free PRS prediction |
poster |
|
Lee, Hanbin |
tslmm—Complex trait modelling with ancestral recombination graphs |
talk |
|
Lemanczyk, Marta S |
A toolkit for evaluating post-hoc interpretability in the genomic domain |
poster |
|
LeMay, Charlotte M |
ARG inference for gene duplicates |
poster |
|
Li, Hui |
FunKAT improves the power of gene-based association test by modeling the functional heterogeneity of variants within genes |
poster |
|
Li, Jinmin |
Leveraging ancestral recombination graphs for artificial genome simulation |
poster |
|
Liang, Jiatong |
A fast general framework for demographic inference using IICR curves |
poster |
|
Lim, Daven |
The evolution of structural variation across the vertebrate tree of life |
poster |
|
Lin, Ying Fei |
Root estimation in phylogenetic trees using deep learning |
poster |
|
Liu, Jiayi |
Computational framework for predicting the effect of non-coding variation |
poster |
|
Liu, Yang |
Monitoring rapid evolution of recombinant inbred lines with Pool-seq in plants |
poster |
|
Liu, Yuda |
Multi-task matrix factorization for cell type-specific transcription factor activity estimation |
poster |
|
Loell, Kaiser |
A systematic evaluation of the impact of output distribution and nonlinearity on genomic deep neural net training performance |
poster |
|
Long, Micaela |
Genomic data visualization using graphs and Fermat distance |
poster |
|
Lorenz, Anna |
Age-related protein changes in Hispanic/Latino individuals |
poster |
|
Lu, Wenhan |
Heritability and effect-size distribution of rare and de novo protein-coding variation |
talk |
|
Machado, Luiz C |
Ancestral recombination graphs for detecting adaptive introgression in the maize genome |
poster |
|
Markarian, Nicholas |
Mixtures of Gaussian latent variable models |
talk |
|
Martens, Laura D |
Dissecting single-cell gene regulation with scooby—From eQTLs to organoid development |
poster |
|
Martí-Gómez, Carlos |
Learning sequence-function relationships with scalable and biologically interpretable gaussian process models |
poster |
|
Massey, Dashiell |
Instability in the inference of parental global ancestry proportion from offspring |
poster |
|
Matthews, Jamie E |
Liabilideep—A deep learning approach to modeling covariates in non-randomly ascertained genetic association studies |
poster |
|
Mawass, Walid |
Evaluating confounding bias in polygenic score associations due to imperfect control of population stratification |
poster |
|
Mazzeo, Giovanni R |
Inferring fluctuating selection from a snapshot of genetic variation |
poster |
|
Medina Tretmanis, Jazeps |
Joint inference of continental and archaic ancestry—A deep learning approach |
talk |
|
Messer, Conor |
Applying statistics-first, reference-free genomics analysis to diverse human whole genome data |
poster |
|
Mies, Georgia |
Evaluating local ancestry inference methods to identify post-admixture adaptation in Neolithic Europe |
poster |
|
Munch, Kasper |
Probabilistic modeling in genomics |
poster |
|
Narayanan, Manikandan |
MultiPopPred—A trans-ethnic disease risk prediction method, and its application to the South Asian population |
poster |
|
Nordborg, Magnus |
Towards an unbiased characterization of genetic polymorphism |
poster |
|
Ortega-Del Vecchyo, Diego |
Natural selection acting on complex traits hampers the predictive accuracy of polygenic scores in ancient samples |
talk |
|
Osele, Metu |
DeepTaxon—Using deep learning for biological classification |
talk |
|
Pacheco, Antonio F |
Balancing, linkage and effects of selection—a deep learning approach |
poster |
|
Palpant, Nathan |
Combinatorial multivariate epigenomic patterns reveal the genomic basis of cell phenotypes underpinning complex traits |
poster |
|
Pedersen, Bjarke M |
Correlated landscapes of genomic diversity across primates are driven by non-neutral processes |
poster |
|
Pe'er, Dana |
Through the Wasserstein Wormhole—Exploring tissue biology |
talk |
|
Pennell, Matt |
Macroevolutionary divergence in gene expression driven by selection on protein abundance |
talk |
|
Poon, Yeuk Pin Gladys |
Multi-state evolutionary model quantifies tumour cellular plasticity |
talk |
|
Ragsdale, Aaron P |
Stabilizing selection shapes the distribution of shared variation after introgression |
poster |
|
Rahman Hera, Mahmudur |
Fast and scalable genome-wide mutation rate calculation using k-mers and sketching |
poster |
|
Rahman, Amatur |
Efficient and robust computation of EHH-based statistics for large-scale data |
poster |
|
Ralph, Peter |
Dating large ARGs, with clinical applications |
talk |
|
Riall, Kellen T |
Information about the derived orientation of disease risk-increasing variants provides power to detect signals of directional selection on diseases |
poster |
|
Robson, Eyes S |
The ACGTs of language modeling |
poster |
|
Roshani, Rashedeh |
Gene and protein expression changes associated with liver disease in Hispanic/Latino population at risk for metabolic-associated fatty liver disease |
poster |
|
Sadowski, Michal |
Towards resolving scaling and endogeneity induced confounding in gene-environment interaction tests |
poster |
|
Schraiber, Joshua G |
An evolution-guided genetic relatedness matrix reveals the action of natural selection in shaping complex trait variation |
talk |
|
Schrider, Daniel |
Rapid adaptation via soft sweeps in Aedes aegypti |
poster |
|
Schroeder, Jeremy |
ShapeME—A tool and web front-end for de novo discovery of structural motifs underpinning protein-DNA interactions |
poster |
|
Scicluna, Matthew C |
PHATE effectively captures continuous population structure in human genomic data |
poster |
|
Seitz, Evan |
Deciphering the determinants of mechanistic variation in regulatory sequences |
poster |
|
Sgarlata, Gabriele M |
Quantifying the genome-wide effect of polygenic selection over a single generation |
talk |
|
Shastry, Vivaswat |
Computing likelihoods for genealogies under selection |
poster |
|
Shi, Zhuozheng |
Genetic causal effect similarity across local ancestries in Hispanic Latino Americans |
poster |
|
Si, Yichen |
Genealogy-informed genotype calling of human Y chromosome in large scale sequencing data |
poster |
|
Simons, Yuval B |
Stabilizing selection generates selection against introgressed DNA |
poster |
|
Singh, Vinod K |
Methylation-based cell type classification at single DNA read level |
poster |
|
Smith, Megan |
Accurate inferences of introgression in the presence of model violations using machine learning |
talk |
|
Smith, Thomas Q |
Identifying evolutionary influences on local genomic patterns of genetic relatedness |
poster |
|
Snell, Hannah |
WINDEX—A hierarchical integration of site- and window-based statistics for modeling the footprint of positive selection |
poster |
|
Specht, Ivan |
PhyloSMC—Fast, parallel Bayesian phylogenetics via Sequential Monte Carlo |
talk |
|
Spence, Jeffrey P |
Specificity, length, and luck—How genes are prioritized by rare and common variant association studies |
poster |
|
Staklinski, Stephen J |
Bayesian inference of the metastasis graph from cancer cell lineage tracing data |
talk |
|
Stentella, Tommaso |
A novel Bayesian method to perform demographic inference from genomic data |
poster |
|
Subramanian, Lakshminarayanan |
The elusive search for a gold-standard zero imputation method |
poster |
|
Syed, Maha |
plinkQC—A genomic ancestry and quality control R/CRAN package |
poster |
|
Tagami, Daiki |
tstrait—A quantitative trait simulator for ancestral recombination graphs |
poster |
|
Tayeb, Karl |
A Bayesian approach to gene set enrichment analysis that identifies redundant and complimentary gene sets |
poster |
|
Tella, Sri Manjusha |
Cell type classification using deep learning models—Evaluating the impact of Hi-C data normalization on similarity measures |
poster |
|
Tian, Xiaohe |
Assortative mating estimates between populations and confounding by socioeconomic status |
poster |
|
Tittes, Silas |
Adding selection to stdpopsim |
poster |
|
Tomaz da Silva, Pedro |
Nucleotide dependency analysis of DNA language models reveals genomic functional elements |
poster |
|
Tsai, Yi-Ting |
Distance metrics and statistical summaries of labeled phylogenies |
poster |
|
Turfah, Ali |
PHM—Multiresolution clustering of genomic data |
poster |
|
Valadares Barroso, Gustavo |
A new model of background selection in non-equilibrium populations |
poster |
|
Vaughn, Andrew H |
The impact of ancient selective pressures and dietary changes on obesity and weight-related diseases in modern Eurasian populations |
poster |
|
Wang, Bo |
DAP-S—An improved variable selection approach for probabilistic fine-mapping analysis |
poster |
|
Wang, Jeremy |
The problem with gestalt genetics—Genetic association does not commute with addition |
poster |
|
Wang, Qifan |
Improving polygenic score portability using local BLUP |
poster |
|
Wang, Ting-Chen |
Investigate sex-specific genetic effects on neurological traits and disorders through genetically regulated gene expression |
poster |
|
Willwerscheid, Jason |
gEBMF—A fast and flexible matrix-factorization approach to discovering structure in multi-omics data. |
poster |
|
Xia, Ziyang |
Patterns of genetic variation in populations with source-sink dynamics |
poster |
|
Xing, Jiawei |
A modeling framework for differential gene expression analyses leveraging lineage phylogenies of metastatic cancers |
poster |
|
Xu, Bingxian M |
Variational inference of single cell time series |
poster |
|
Xu, Perry Peiyu |
Tree-based inference methods for Mycobacterium tuberculosis transmissibility |
poster |
|
Yao, Liwen |
DeepCRE—A multimodal transformer framework for decoding and generating tissue-specific mammalian enhancers |
poster |
|
Yohannes, Mary T |
Genomic variation and ethnolinguistic diversity in >42k eastern and southern Africans highlight the relationship between genetic variation and individuals’ cultural affiliations |
talk |
|
Zaidi, Arslan A |
Behavior of random-effect SNP heritability estimators in admixed populations |
poster |
|
Zhang, Joy Zhichun |
Efficient inference frameworks for the seedbank coalescent with a fixed genealogy |
poster |
|
Zhang, Yali |
Prematurity and genetic liability for autism spectrum disorder |
poster |
|
Zhou, Juannan |
importance of higher-order epistasis in protein sequence-function relationships |
poster |
|
Zhu, Yixin |
Modeling the fitness effects of missense and non-coding variants using rare-variant genealogies |
poster |