|
Presenting Author |
Abstract Title |
Talk/Poster |
|
Alvarez, Jose M |
Opposite forces—Transcriptional networks that integrate stress and nutritional signals in plants. |
poster |
|
Aregger, Michael |
Combinatorial CRISPR screening uncovers genetic interaction networks underlying metabolic plasticity in cancer cells |
talk |
|
Bader, Gary D |
Mapping the multiscale human |
talk |
|
Bennett, Kate |
Hypergraph approach to identify serum biomarkers of glucocorticoid downstream action in adipose tissue |
poster |
|
Beyer, Andreas |
One size fits all – using a general purpose transcriptome network to understand human biology |
talk |
|
Braynen, Janeen C |
Genomic strategies to improve nitrogen use efficiency and reduce nitrate levels in sorghum forage lines |
poster |
|
Braynen, Janeen C |
Understanding iron response mechanisms and carbon partitioning strategies in sorghum under Fe stress |
poster |
|
Brun, Christine G |
Predictions of human micropeptide functions from an interactome study |
poster |
|
Bruns, Imke |
Translational systems toxicology models bridging in vitro renal test systems to human renal pathologies |
poster |
|
Callegaro, Giulia |
The TXG-MAPr—An unprecedented transcriptomics database and network model of toxicological test systems |
poster |
|
Carpenter, Anne E |
Learning about gene functions and gene relationships from cell images |
talk |
|
Carvunis, Anne-Ruxandra |
Network biology of the dark proteome |
talk |
|
Cetin, Ronay |
Towards sequential genetic dependencies—Technical and experimental considerations |
poster |
|
Chakrabarty, Souparna |
Introducing dysfunctional protein-protein interactome (dfPPI)—A platform for systems-level protein-protein interaction (PPI) network dysfunction investigation in disease |
talk |
|
Clark, Amanda M |
Characterization of tertiary lymphoid structures in inflammatory bowel disease |
poster |
|
Creeggan, Finn |
A multi-omic network analysis defines a novel reactive ependymal cell state in multiple sclerosis |
poster |
|
Daakour, Sarah |
Integrative genome-wide interactome mapping of a high-light-adapted Cyanobacterium species using CrY2H-seq and generative AI |
talk |
|
Das, Jishnu |
An interpretable multi-scale network approach to uncover novel drivers of T follicular helper cell differentiation |
poster |
|
Das, Jishnu |
Sliding Window INteraction Grammar (SWING)—A generalized interaction language model for peptide and protein interactions |
talk |
|
Das, Jishnu |
Uncovering novel cellular programs and regulatory circuits underlying primary human B Cell states |
poster |
|
Daura, Xavier |
Identification of COPD comorbidity biomarkers using network biology and deep learning, validated with real-world data |
poster |
|
DeGroat, William B |
Reconstructing cell type-specific enhancer-promoter interaction regulatory networks with massively parallel reporter assays |
talk |
|
Diss, Guillaume |
Deep mutational scanning of entire human protein interaction domain families |
talk |
|
Falter-Braun, Pascal |
Network organization of human genetic variation—Modules and core genes |
talk |
|
Fernandez Macgregor, Jaime M |
Gut microbiome Pseudomonadota—Quantifying the molecular dialogue |
poster |
|
Fischbach, Mathew |
Genetic interaction-based machine learning models for disease risk prediction |
poster |
|
Fisher, Jasmin |
Cancer digital twins |
talk |
|
Fu, TingTing |
Epigenetic regulatory network in microglia reveals context-dependent trans-regulatory programs in brain disease |
poster |
|
Fuxman Bass, Juan I |
Widespread variation in molecular interactions and regulatory properties among transcription factor isoforms |
talk |
|
Georgakopoulos-Soares, Ilias |
Identification of the shortest species-specific oligonucleotide sequences |
poster |
|
Gladman, Nicholas P |
Pan-transcriptome of developing sorghum meristems reveal putative regulatory targets for mature seed traits |
poster |
|
Guan, Yue |
High-throughput and high-resolution mapping of MDM2 interactions screened against cancer relevant proteins |
poster |
|
Hammell, Christopher |
LIN-42/Period coordinates a network of transcription factors to program sequential cell fates during C. elegans larval development |
poster |
|
Hart, Traver |
Network-guided IN4MER interaction screens of 350 genes in 12 cell lines show dense genetic interaction networks in RTK signaling and DNA damage response |
talk |
|
Hassan, Arshia Zernab |
Integrating chemical-genetic interactions and gene-expression profiles to predict tumor drug sensitivity |
talk |
|
Hayes, Wayne B |
Graphlet-based magic tricks for community detection, link prediction, and local network alignment |
poster |
|
Houghton, Carly L |
Subcellular localization and expression of de novo emerged proteins |
poster |
|
Jaaks-Kraatz, Sebastian |
The genetic architecture of the human SH3 domain interaction network |
poster |
|
Jakobson, Chris |
A genome-to-proteome atlas charts natural variants controlling proteome diversity and forecasts their fitness effects |
talk |
|
Jensen, Lars Juhl |
Disease protein prioritization from omics data and STRING network embeddings |
talk |
|
Jo, Kyeong Beom |
Gene perturbation profile similarity network using a novel overexpression screening platform for chemotherapeutic resistance |
talk |
|
Karamveer, Karamveer |
An unbiased evaluation of single-cell multi-omic GRN inference methods |
poster |
|
Kaulich, Manuel |
Time-resolved combinatorial perturbations identify iterative druggable relationships. |
talk |
|
Khetan, Shubham |
Transcription factor genomic occupancy is determined by multiple, overlapping DNA binding sites. |
talk |
|
Kong, JungHo |
A foundation model of the tumor mutation reveals biomarkers of drug response |
talk |
|
Kosciuszko, Martyna |
Hypergraph analysis of single cell transcriptomic data implicates placental genes associated with birthweight in healthy pregnancies that display distinct later-life risk phenotypes |
poster |
|
Krishnan, Arjun |
Joint representation of multispecies networks for classifying genes and phenotypes within and across species |
poster |
|
Krishnaswamy, Smita |
Dynamics-based network-inference using neural and graph ODEs |
talk |
|
Lambourne, Luke |
Comprehensive empirical assessment of interactome computability |
poster |
|
Land, Max |
Investigating the cellular response to mtDNA deletion heteroplasmy using optimized mtDOGMA-seq |
poster |
|
Leger, Brittany S |
Getting the run around—Is the locomotor response to a novel environment a model of human externalizing behavior? |
poster |
|
Levy, Orr |
Gene regulatory interactions limit the gene expression diversity |
poster |
|
Licata, Luana |
The IMEx binding domain dataset—A useful tool to analyse and predict interaction interfaces and variant effects |
poster |
|
Louloudis, Ioannis |
Data driven drug repurposing using electronic health records |
poster |
|
Luck, Katja |
From networks to mechanisms in health and disease |
talk |
|
Madenidou, Anastasia |
Utilising hypergragh multi-omic intergration to compare two mass spectrometry proteomic methods—MagNet and S-TRAP |
poster |
|
Malek, Joel A |
A tiled synthetic fragment protein-interaction map of all Helicobacter pylori genes using short-read sequencing |
poster |
|
Martirosian, Evgenii |
Hypergraph approach reveals distorted cis-interacting DNA methylome in Kabuki syndrome Type 1 |
poster |
|
McDonald, Eli F |
Proteostasis landscapes of cystic fibrosis variants reveals drug response vulnerability |
poster |
|
McKim, Alexander P |
A modular network-based approach improves post-omics and post-GWAS hypothesis generation about disease genes and mechanisms |
poster |
|
Moeller, Eric S |
Inferring gene regulatory networks from single-cell multiomic data—A novel framework for cell-level analysis |
poster |
|
Monsellier, Elodie |
The holdup assay—Towards system-wide affinity mapping of interactomes |
talk |
|
Nakatsuka, Nathan J |
A reproducibility focused meta-analysis method for single-cell transcriptomic case-control studies uncovers robust differentially expressed genes and networks |
poster |
|
Narayanan, Manikandan |
NLCD—A method to discover nonlinear causal relations among genes |
poster |
|
Nersisyan, Stepan |
Adjusting for hidden confounders in transcriptomic correlation networks with CorrAdjust |
poster |
|
Ocitti, Faith Abiria |
Decoding the functional interactome of non-model organisms with PHILHARMONIC |
poster |
|
Oliva, Baldo |
SNPeBoT—A method for predicting transcription factor allele specific binding |
poster |
|
Palenikova, Petra |
Building cell-type-specific protein-protein interaction networks of transcription factors and general cofactors to study the combinatorial logic of gene regulation programs |
poster |
|
Parwana, Diksha |
From local perturbations to global dynamics—ENMs for allosteric site prediction |
poster |
|
Penny, Eleanor |
Modelling gene regulatory networks underlying wheat inflorescence architecture |
poster |
|
Perfetto, Livia |
PatientProfiler, a network-based approach to support personalized medicine |
talk |
|
Petsalaki, Evangelia |
Integrative network analysis to uncover mechanisms of melanoma drug resistance |
talk |
|
Pinheiro-de-Sousa, Iguaracy |
From networks to improve cardiac organoid design |
poster |
|
Rele, Chinmay P |
Network topology is correlated with evolutionary rates of genes and their regulatory regions in Drosophila |
poster |
|
Rogers, Julia |
Quantitative models of signaling networks enabled by machine learning |
talk |
|
Rohde, Thomas |
BaCoN (Balanced Correlation Network) improves prediction of gene buffering |
poster |
|
Saez-Rodriguez, Julio |
Combining prior knowledge networks and multi-omics data to extract disease mechanisms |
talk |
|
Serohijos, Adrian |
Genetic landscape of an in vivo protein interactome—Development of protein-interaction QTL (piQTL) mapping |
talk |
|
Sidhu, Gurpinder Singh |
From Arabidopsis to Brassica napus—Determining the regulatory control of flowering time |
poster |
|
Simhal, Anish K |
The blessings of dimensionality—Unsupervised network-based learning on omic data using Ollivier-Ricci curvature |
poster |
|
Skinnider, Michael |
Harmonizing interaction proteomic datasets at the repository scale |
talk |
|
Sledzieski, Samuel |
Decoding the functional interactome of non-model organisms with PHILHARMONIC |
poster |
|
Sontakke, Neha |
Bayesian inference for metabolic gap filling in microbiomes |
poster |
|
Springer, Michael |
The galactokinase enzyme of yeast senses metabolic flux to stabilize galactose pathway regulation |
talk |
|
Szymborski, Joseph |
A serious flaw in the design of pLLM-based protein-protein interaction models |
poster |
|
Taipale, Mikko |
Protein (mis)localization in human genetic disorders |
talk |
|
Terai, Kiriko |
Protein fluctuations produce non-Arrhenius electron transport in Geobacter OmcS nanowires |
poster |
|
Terao, Chikashi |
Deciphering human complex traits using population-specific germline and somatic genetic variations combined with gene expression regulation |
poster |
|
Trave, Gilles |
Systemwide mapping of binding free energies of living organisms—What for? |
poster |
|
Uzun, Yasin |
Building cell-specific gene regulatory networks with single-cell multi-omics |
poster |
|
Valensi, Hannah |
A comprehensive single-cell multi-omic repository for robust gene regulatory network construction and validation |
poster |
|
Vasciaveo, Alessandro |
Reversing lineage plasticity and drug resistance in lethal prostate cancer |
poster |
|
Vera Guapi, Loren Antonella |
Time-separated combinatorial screens uncover directional dependencies among cancer druggables |
poster |
|
Waaben, Jens |
Exploring the sub-diagnosis level effects of different active components in hormonal contraception |
poster |
|
Walhout, Marian |
Genome-scale models of metabolic wiring and rewiring |
talk |
|
Wang, Emily |
Simulating electron bifurcation hopping networks in bacterial [FeFe]-hydrogenase |
poster |
|
Wang, Wen |
Evidence for genetic interactions as shared genetic risk factors for Parkinson’s and Alzheimer’s disease |
poster |
|
Wang, Yijie |
Leveraging transcription factor physical proximity for enhancing gene regulation inference |
poster |
|
Wang, Zijian |
Exploration of cascade behavior in higher-order networks |
poster |
|
Wanker, Erich E |
The genotype-phenotype nexus—Uncovering causal mechanisms in neurodegenerative disease with experimental and theoretical approaches |
talk |
|
White, William L |
Proofreading and single-molecule sensitivity in T-cell receptor signaling by condensate nucleation |
poster |
|
Wright, Lily |
Single cell transcriptome hypergraph modelling of the fallopian tube epithelium identifies cellular specialisation and gene network associations with ectopic pregnancy |
poster |
|
Xi, Emma H |
Crystal structure of the Orsay virus fiber knob reveals mechanisms for host receptor interaction |
poster |
|
Yi, Stephen |
Systems-scale, population-level disease stratification and precision medicine prediction by transfer learning and functional variomics |
talk |
|
Yiasoumi, Georgia N |
A Bayesian approach to building co-expression networks from multiple datasets |
poster |
|
Yuan, Hao |
ICePop—Identifying disease-affected cell types through network-based analysis of gene module overexpression in single-cell data |
poster |
|
Zeng, Xin |
Gene2role—A role-based gene embedding method for comparative analysis of signed gene regulatory networks |
poster |
|
Zhang, Lifang |
Characterization of key regulators in microRNA-mediated responses to phosphate deficiency during Arabidopsis root development |
poster |
|
Zhang, Xiang |
A deep learning approach for predicting genetic interactions in human cells |
poster |
|
Zhao, Yunwei |
A bayesian framework for single-cell gene regulatory network discovery with contrastive learning |
poster |
|
Zitnik, Marinka |
ProCyon—A multimodal foundation model for protein phenotypes |
talk |
|
Zubair, Ghania |
Bioinformatics approaches to distinguish ipsilateral and contralateral retinal ganglion cell populations—Molecular signatures and computational strategies |
poster |