|
Presenting Author |
Abstract Title |
Talk/Poster |
|
Aganezov, Sergey |
Inferring clone- and haplotype-specific chromosomal organization in rearranged cancer genomes with multiple sequencing technologies |
talk |
|
Alonge, Michael |
Long-read sequencing reveals the structural variant landscape in tomato |
poster/lightning talk |
|
Arbel, Hamutal |
Evaluation of modern approaches for the complex trait prediction using genetic data |
poster |
|
Ballinger, Tracy J |
Are double strand breaks associated with collisions between replication and transcription machineries? |
poster |
|
Balsubramani, Akshay |
Multi-resolution, interactive, atlas-scale integration of single-cell assays and experiments |
talk |
|
Barreira, Sofia N |
Exploring the role of ribosomal gene repeats in the context of regeneration |
talk |
|
Bennett, Christopher |
Genomeworks suite—Accurate genotyping and practical diploid genome assembly guided with known genome sequences |
poster |
|
Benoodt, Lauren |
Context specific network topologies derived from knowledge and transcriptomic data |
poster |
|
Bentsen, Mette S |
Beyond accessibility—ATAC-seq footprinting analysis reveals dynamics of transcription factor binding during preimplantation development |
talk |
|
Berakdar, Fadel M |
novoSplice—A gene, splice and quality aware RNA-seq aligner |
poster |
|
Berg, Jordan A |
XPRESSyourself—Enhancing, standardizing, and automating ribosome profiling computational analyses yields improved insight into data |
poster/lightning talk |
|
Blankenberg, Daniel J |
An integrative environment for microbiome analysis and visualization |
poster |
|
Blibaum, Ash |
Mercury—High quality visualization and reproducible exploratory analysis of scRNA-seq data |
poster |
|
Blibaum, Ash |
ProtoCell—Automated identification of cell types in single-cell RNA-seq data using prototypical neural networks |
poster |
|
Booeshaghi, Ali Sina |
Algorithms and Infrastructure for accurate pre-processing and analysis of single-cell RNA-seq |
poster/lightning talk |
|
Brennan, Patrick J |
Tumor-only detection of MSI using machine learning in endometrial cancer patients |
poster |
|
Brown, Stuart L |
Transcriptional and clinical impact of chromothripsis |
poster |
|
Budurlean, Laura |
Rare germline variants may explain increased susceptibility to inherited breast cancer |
poster |
|
Busby, Ben |
Enabling federated data access with hackathon-based indexing principles |
poster |
|
Bzikadze, Andrey |
centroFlye—Assembling centromeres with long error-prone reads |
talk |
|
Cameron, Daniel L |
Unscrambling the tumor genome via integrated analysis of structural variation and copy number |
talk |
|
Cartwright, Reed A |
Estimating mutation rates and processes in non-model and emerging model organisms |
poster |
|
Castro Pacheco, Nathan |
Quantifying isoform expression in single-cell RNA-seq data with STARsolo-Quant |
talk |
|
Chamberlin, John |
Intronic reads impart systematic bias on expression estimates in droplet single cell RNA-seq |
poster/lightning talk |
|
Chen, Chujia |
Assembling the Y chromosomes of anopheles mosquitoes |
talk |
|
Chen, Nae-Chyun |
Improving linear alignment accuracy and reducing bias using reference flow |
poster/lightning talk |
|
Chen, Xi |
Tissue-specific enhancer functional networks for associating distal regulatory regions to disease |
talk |
|
Cheng, Haoyu |
Haplotype-resolved de novo assembly with accurate long reads |
poster |
|
Chougule, Kapeel M |
Characterizing genetic and transcript variation using long single molecule sequencing in maize |
poster |
|
Chu, Chong |
xTEA—A transposable element insertion analyzer for genome sequencing data from multiple technologies |
poster |
|
Clawson, Hiram |
REST API interface for the UCSC Genome Browser |
poster |
|
Conesa, Ana V |
The functional iso-transcriptomics analysis framework to assess the functional impact of alternative isoform usage |
talk |
|
Cowley, Lauren |
The use of kmer counts to train random forests to predict country of origin for bacterial pathogen sequencing data |
talk |
|
Crow, Megan |
Predictability of human differential gene expression |
poster |
|
Dahiya, Daisy |
Deconvolution of origins of replication |
poster |
|
Darby, Charlotte |
Vargas—Heuristic-free alignment for assessing linear and graph read aligners |
poster |
|
Dashnow, Harriet |
Exploring short tandem repeat expansions at both known and novel loci in the human genome |
talk |
|
Davila, Jaime I |
RNA-seq mutational signatures allow quantification of expressed tumor mutational burden from clinical samples |
poster |
|
Dawes, Ruebena |
Gene discovery informatics toolkit defines candidate genes for unexplained infertility and prenatal or infantile mortality |
poster |
|
Demirdjian, Levon V |
Detecting allele-specific alternative splicing from population-scale RNA-seq data |
poster |
|
Dhingra, Priyanka |
Using machine learning to automatize antisense oligonucleotide target discovery and design |
poster |
|
Di Genova, Alex |
WENGAN—Efficient and high quality hybrid de novo assembly of human genomes |
poster |
|
Dilthey, Alexander T |
Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps |
talk |
|
Dobin, Alexander |
STARsolo—Single cell RNA-seq data analysis beyond gene expression |
poster |
|
Dong, Shengcheng |
Prediction of regulatory SNPs affecting transcription factor binding using RegulomeDB |
poster |
|
Dou, Yanmei |
MosaicForecast—Accurate detection of mosaic variants in sequencing data without matched controls |
poster |
|
Eichler, Evan |
Long-read sequencing of structurally variant genomes |
talk |
|
Evans, Jared M |
Calling, filtering, and evaluating de novo variants in whole genome sequencing from HLHS families |
poster |
|
Fahmi, Naima Ahmed |
AS-Quant—Detection and visualization of alternative splicing events with RNA-seq |
poster/lightning talk |
|
Fan, Yunfan |
Genome and transcriptome assembly of Candida nivariensis using r9 and r10 type ONT sequencing flowcells |
poster |
|
Fredenburg, Jacob D |
Early life exposure to TCDD alters the chromatin landscape across the life course |
poster |
|
Friedberg, Iddo |
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens |
poster |
|
Gabitto, Mariano |
Elucidating the chromatin landscape of cortical interneurons |
poster |
|
Gaither, Jeff |
SNPDogg—Transparent pathogenicity assessment for missense variants |
poster |
|
Gangavarapu, Karthik |
Genomic epidemiology of West Nile virus in California |
talk |
|
Garcia Giron, Carlos |
Representing multiple assemblies per species in Ensembl |
poster |
|
Garcia Mesa, Juan J |
Novel models for identifying artifacts in genomic datasets |
poster |
|
Garg, Shilpa |
Efficient chromosome-scale haplotype-resolved assembly of human individuals |
talk |
|
Ge, Weihao |
A novel engine to build multi-locus epistatic model in complex diseases |
poster |
|
Gerstein, Mark |
Enhancing open data sharing for functional genomics experiments—Measures to quantify genomic information leakage & identify file formats for privacy preservation |
poster |
|
Gilpatrick, Timothy |
Targeted Nanopore sequencing with Cas9 for studies of methylation, structural variants, and mutations |
talk |
|
Glusman, Gustavo |
Analyzing personal genomes, phenomes and electronic health records at scale |
poster |
|
Goeke, Jonathan |
Long read Nanopore RNA-sequencing of the cancer transcriptome |
poster |
|
Gong, Sung Sam |
The RNA landscape of the human placenta in health and disease |
poster |
|
Gong, Tingting |
Refining somatic structural variant detection and annotation for precision oncology |
poster/lightning talk |
|
Gottimukkala, Rajesh Kumar |
Detection of gene fusions and exon deletion events in FFPE samples using next generation targeted sequencing assays |
poster |
|
Groza, Cristian |
Personalized and graph genomes reveal missing signal in epigenomic data |
poster/lightning talk |
|
Guidi, Giulia |
BELLA—Berkeley efficient long-read to long-read aligner and overlapper |
poster/lightning talk |
|
Hanage, William |
Is pathogen evolution predictable? The role of population genomics |
talk |
|
Hardwick, Simon A |
Targeted, high-resolution RNA sequencing of non-coding genomic regions associated with neuropsychiatric functions |
poster |
|
Hejase, Hussein |
A recurrent neural network for inferring sweeps and allele frequency trajectories using gene trees based on the ancestral recombination graph |
talk |
|
Hercus, Colin F |
Novoalign performance optimization |
poster |
|
Hill, Abby S |
Prevalence estimates of rare diseases derived from population allele frequencies are sensitive to key assumptions |
poster |
|
Hirose, Naoki |
Functional annotation of non-coding regions in the genome of non-human primates |
poster |
|
Hitz, Benjamin |
RegulomeDB 2.0 |
poster |
|
Huang, Yifei |
Unified inference of missense variant effects and gene constraints in the human genome |
poster |
|
Hunt, Toby |
TAGENE—An annotation pipeline to integrate long read transcriptomic data into GENCODE |
poster |
|
Jain, Chirag |
Sequence to graph alignment—Computational complexity and algorithms |
poster |
|
James, Corey |
Modulating cellular adaptive response via the Nrf2 pathway in rat primary hepatocytes |
poster |
|
Joglekar, Anoushka |
Enhanced interpretation of single cell isoform RNA sequencing (ScISOr-Seq) reveals highly distinct
programs affected by alternative splicing in the developing mouse brain |
poster/lightning talk |
|
Jongeneel, Patrick M |
Improved tumor-only somatic variant calling using gradient boosted decision trees |
poster |
|
Kahles, Andre |
Metagraph—Representing massive data sets at scale |
poster |
|
Kaminow, Benjamin |
Creating pan-human and population-specific consensus representations of the reference genome and assessing their effect on functional genomic data analysis |
talk |
|
Kasukawa, Takeya |
refTSS—A reference dataset of human and mouse transcription start sites |
poster |
|
Keener, Nicholas |
Analysis of sequence variants in non-diploid systems at scale—New results from existing data |
poster |
|
Kirsche, Melanie |
IRIS: Improved structural variant calls |
poster/lightning talk |
|
Kitts, Paul |
Using average nucleotide identity to correct taxonomic assignments in genomes at the NCBI |
poster |
|
Kleinert, Philip |
CADD-SV—A framework to score the effect of structural variants in health and disease |
poster/lightning talk |
|
Kolmogorov, Mikhail |
metaFlye—Scalable long-read metagenome assembly using repeat graphs |
talk |
|
Koren, Sergey |
Assembly featuring exact-match overlaps of homopolymer-collapsed HiFi reads improves haplotype separation and repeat resolution |
poster |
|
Kovaka, Sam |
Rapidly mapping raw nanopore signal with UNCALLED to enable real-time targeted sequencing |
talk |
|
Kuck, Harkness |
Varhouse—A scalable, serverless warehouse for variant interpretation |
poster |
|
Kumar, Vivek |
Integrative analysis of multi-omics datasets to accelerate scientific discovery using Systems Biology Knowledgebase, KBase |
poster |
|
Kwan, Harwood |
The POG570 cohort—An inquiry into the genomic landscape of treated advanced tumors |
poster |
|
LaHaye, Stephanie D |
Utilization of an ensemble approach for identification of driver fusions in pediatric cancer |
talk |
|
Langhorst, Bradley W |
Correcting methylation calls in low-mappability regions |
poster |
|
Langmead, Ben |
Genomic sketching with HyperLogLog |
talk |
|
Lariviere, Delphine M |
Devising best practices for the analysis of transposon insertion sequencing data |
poster |
|
Lasseigne, Brittany N |
Integrative analysis of copy number burden and prediction across human cancers |
poster |
|
Le Roch, Karine G |
Comparative 3D genome organization in Apicomplexan parasites |
talk |
|
Lee, Isac |
Methylation and chromatin accessibility analysis using long-read sequencing |
poster |
|
Lesack, Kyle |
Structural variation in naturally occurring isolates of Caenorhabditis elegans |
poster |
|
Lewis, Wesley R |
Exploration of subtype-level immune cell classification via the prototypical neural network model Protocell |
poster |
|
Li, Danxun |
Understanding inflammation in the gut by chromatin accessibility |
poster |
|
Li, Heng |
The construct and utility of reference pan-genome graphs |
talk |
|
Lin, Khine Zin |
ENCODE Data on the Cloud |
poster |
|
Lin, Kuan-Ting |
PSI-Sigma—A comprehensive splicing-detection method for short-read and long-read RNA-seq analysis |
poster |
|
Lin, Pei |
From benchwork to analyses, an integration of structured data into cloud-based analysis pipelines |
poster |
|
Lleras, Roberto A |
Comprehensive variant detection in a human genome with highly accurate long reads |
poster |
|
Loh, Jui Wan |
All-FIT—Allele-frequency-based imputation of tumor purity from high-depth sequencing data |
poster/lightning talk |
|
Lu, Jennifer |
Fast and accurate 16S microbial community analysis using Kraken 2 |
poster |
|
Lu, Jennifer |
Identifying mis-assembled bacterial genomes using GC Skew |
poster |
|
Lu, Jinfeng |
A new short tandem repeat realignment pipeline allowing simple customized query designed for high accuracy, reliability, and compatibility |
poster |
|
Lu, Shaina |
Pairing gene expression and spatial location to learn whole brain patterns of transcription |
poster/lightning talk |
|
Lu, Zhenyuan |
SciApps.org—A cloud-based platform for reproducible bioinformatics workflows |
poster |
|
Mahmoud, Medhat |
PRINCESS—A framework for comprehensive detection and phasing of SNPs and structural variants |
talk |
|
Marwaha, Shruti |
Phenotype driven variant prioritization for rare diseases |
poster |
|
Mateos, Raul N |
Somatic mutation status prediction by a splicing-alteration-based machine learning technique |
talk |
|
McGaughey, David M |
Integrated analysis of all publicly available ocular scRNAseq datasets |
poster |
|
Melsted, Pall |
Kallistoscope—A graphical user interface for analysis of single-cell RNA-seq with kallisto and bustools |
poster |
|
Mijalkovic, Sanja |
Somatic variant calling benchmarking |
poster |
|
Miller, Brendan F |
A methylation density binary classifier for predicting and optimizing the performance of methylation biomarkers in heterogeneous clinical samples |
poster |
|
Miller, Jeremiah |
Untangling the genetic basis of the web-building behavior in the spider Uloborus diversus |
poster |
|
Miller, Katherine E |
Transcriptomic analysis of pediatric brain tumors to characterize immune cell infiltration in the tumor microenvironment |
poster |
|
Mirhaj, Fahimeh |
STAR-Splice-Graph—Accurate spliced alignment of long noisy reads |
poster |
|
Mitra, Ramkrishna |
Concordant dysregulation and cooperation of both microRNA strands is selected for during tumorigenesis |
poster |
|
Molik, David |
met—A web application tool and framework for the extensive comparison of metagenetic datasets |
poster/lightning talk |
|
Monlong, Jean |
Genotyping structural variants in pangenome graphs using the vg toolkit |
talk |
|
Moreland, Blythe S |
Determining the contribution of codon usage and RNA stability to predicting synonymous and intronic variant pathogenicity and impact on splicing |
poster |
|
Morrow, Alyssa K |
Mango—Data exploration on large genomic datasets |
poster/lightning talk |
|
Morton, James |
Learning representations of microbe-metabolite interactions |
poster |
|
Moss, Alexander C |
Scoring metric for quantitative measure of phenotype similarity |
poster |
|
Mousavi, Nima |
A pipeline for genome-wide genotyping, filtering, and prioritization of tandem repeats |
poster/lightning talk |
|
Moustafa, Ahmed M |
WhatsGNU—A tool for identifying proteomic novelty |
poster |
|
Mughal, Mehreen |
Learning the properties of adaptive regions with functional data analysis |
talk |
|
Mun, Taher |
Using imputation to build a diploid personal genome reference |
poster |
|
Munch, Robin |
Predicting splice-switching oligonucleotides for cancer treatments using SpliceLearnTM |
poster |
|
Nalabolu, Harika Srividya |
MOET—Multi ontology enrichment tool |
poster |
|
Narechania, Apurva |
What do we gain when tolerating loss? The information bottleneck, lossy compression, and detecting horizontal gene transfer |
talk |
|
Narzisi, Giuseppe |
Somatic variant analysis of linked-reads sequencing data with Lancet |
poster |
|
Natri, Heini M |
Inherited genetic and non-coding somatic effects on gene expression and outcome in patients with multiple myeloma |
poster |
|
Navarro, Fabio |
Deconvolving the pervasive transcription from jumping genes in RNA-seq and unveiling their role in tumors |
talk |
|
Nguyen, Peter |
DNAnexus fine mapping for large-scale, end-to-end fine mapping on individual-level UKB datasets |
poster |
|
Nguyen, Son H |
Real-time assembly using Nanopore sequencing data for microbial communities |
talk |
|
Nicholls, Samuel M |
Detecting microbial transmission and engraftment after faecal microbiota transplants using long-read metagenomics and reticulatus |
talk |
|
Novikova, Gloriia |
Integration of Alzheimer's genetics and myeloid genomics reveals novel disease risk mechanisms |
poster/lightning talk |
|
Ogeh, Denye N |
The assembly and transcriptomic registry in Ensembl |
poster |
|
Olson, Andrew |
TBrowse—A modular gene tree viewer for exploring functional conservation |
poster |
|
Olson, Andrew |
Gramene subsites—Pangenome browsers for crops |
talk |
|
Orabi, Baraa |
Annotation-free alternative splicing detection and discovery using long reads |
poster |
|
Orr, Adam J |
KBBQ—A reference-free method for base quality score recalibration |
poster |
|
Ouyang, Ningxin |
TRACE—Transcription factor footprinting using DNase I hypersensitivity data and DNA sequence |
poster |
|
Pan, Yang |
PEGASAS—A pathway-guided approach for analyzing pre-mRNA alternative splicing during cancer progression |
poster |
|
Park, Eddie |
Genetic variation and miRNAs fine-tune A-to-I RNA editing in human tissues |
poster |
|
Park, YoSon |
CIMR—Deciphering complex trait genetics using a continuously integrated meta-resource |
poster |
|
Patro, Robert |
Alignment and mapping methodology influence transcript abundance estimation |
talk |
|
Pertea, Mihaela |
Efficient and robust transcriptome reconstruction from long-read RNA-seq alignments |
talk |
|
Peters, Mollie |
Investigating sex-biased gene expression in the brain to explain Alzheimer’s disease mechanisms |
poster |
|
Phan, Lon |
dbSNP—Integrating dbGaP aggregated allele frequency for variant interpretation |
poster |
|
Phillips, Nicholas |
A deep learning approach to tumor cellularity estimation from tumor-only whole exome sequencing |
poster |
|
Pimentel, Harold |
Genotype in plain sight—Inferring genotype from gene expression quantifications |
poster |
|
Pittman, Maureen |
The disruption of 3D genome organization in congenital heart defects |
poster/lightning talk |
|
Pockrandt, Christopher |
GenMap—Fast and exact computation of genome mappability |
poster |
|
Pollo, Stephen |
MinION sequencing and structural variant analysis reveal important source of genetic variation in Giardia |
poster |
|
Pomella, Nicola |
Characterisation of H3K4me3 histone mark width in medulloblastoma and its regulatory impact |
poster |
|
Potter, Robert F |
Genomic and metatranscriptomic characterization of Gardnerella during bacterial vaginosis |
poster/lightning talk |
|
Rafati, Nima |
Hidden treasure in junk data—Characterizing sex chromosome in Atlantic herring using unmapped reads and long-read sequencing data |
poster |
|
Rajkovic, Andrei |
Sub-continental ancestry inference based on the gnomAD dataset accurately classifies patients at NCH |
talk |
|
Ramachandran, Sohini |
Characterization of prevalence and health consequences of uniparental disomy in four million individuals from the general population |
talk |
|
Ramaiah, Arunachalam |
Genome landscape and associated structural features of chromosomes in Asian malaria mosquito Anopheles stephensi |
poster |
|
Ramakrishnan, Srividya |
Improved gene annotation in 12 new high-quality tomato genome assemblies |
poster |
|
Ramani, Arun K |
Expanding the boundaries of RNA sequencing as a diagnostic tool for rare Mendelian disease |
poster |
|
Ramos, Enrique I |
Analysis of divergent long noncoding RNAs in estrogen-regulated transcription |
poster |
|
Ranallo-Benavidez, Timothy R |
GenomeScope 2.0—Reference-free profiling of polyploid genomes |
poster |
|
Rangwala, Sanjida H |
Completing the picture with NCBI’s Genome Data Viewer |
poster |
|
Reese, Fairlie K |
A graphical representation of transcripts and transcript annotations |
poster/lightning talk |
|
Reis, Andre Luiz Martins |
A universal and independent synthetic DNA scale to measure genetic features |
poster |
|
Rhie, Arang |
Setting standards for defining high quality genome assemblies—Is my genome 'reference' quality? |
poster |
|
Ridout, Kate O |
Patient stratification in the UK’s 100k Genomes Project—Using WGS and machine learning to predict cancer outcomes |
talk |
|
Roach, Nathan P |
The full-length transcriptome of C. elegans using direct RNA sequencing |
poster/lightning talk |
|
Robbe, Pauline |
Investigation of novel drivers in chronic lymphocytic leukemia using whole genome sequencing |
poster |
|
Rothfels, Karen |
The Reactome Pathway Knowledgebase—Curation and visualization of disease-causing genetic variation and therapeutic strategies |
poster |
|
Rounthwaite, Robin L |
Making genome graphs more concise—Normalization of suboptimally represented genetic variation |
poster |
|
Rozowsky, Joel |
excerpt—A comprehensive analytic platform for extracellular RNA profiling |
poster |
|
Ruess, Holly M |
Developing and maintaining reproducible workflows for bioinformatics data which are platform independent |
poster |
|
Sae-Ong, Tongta |
Genomics insights into azole resistance in Aspergillus fumigatus |
poster |
|
Salameh, Tarik J |
A supervised learning framework for detecting chromatin loops in genome wide interaction data |
poster |
|
Schneider, Valerie |
Babies and bathwater—Balancing the need for stable coordinates and representation of post-GRCh38 chromosome improvements in the next human reference genome |
poster |
|
Schones, Dustin |
Comparative epigenomics of liver metabolic response |
poster |
|
Schuilenburg, Helen |
The Ensembl Variant Effect Predictor—Recent enhancements |
poster |
|
Sedlazeck, Fritz J. |
Population level sequencing using long reads |
poster |
|
Semple, Colin |
Increased novel variant load in an isolated Scottish population impacts exonic and regulatory regions |
poster |
|
Sheffield, Nathan |
Refgenie—A reference genome resource manager |
poster |
|
Shumate, Alaina G |
Liftoff—A pipeline for mapping genes onto high-quality genome assemblies |
poster |
|
Sienkiewicz, Karolina M |
Molecular subtyping using nonnegative matrix tri-factorization |
poster |
|
Smith, Samuel A |
The influence of local LD structure on cross-ancestry disease risk prediction |
poster |
|
Sorokin, Elena P |
Model selection and permutation testing for association studies within a large direct-to-consumer genetic cohort |
talk |
|
Southwood, Dean |
Benchmarking state-of-the-art genome assembly methods for eukaryotic genomes. |
poster |
|
Steinegger, Martin |
New algorithms and tools for large-scale sequence analysis of metagenomic data |
poster |
|
Steinegger, Martin |
Terminating contamination—Large-scale search identifies >300,000 contaminated entries in GenBank |
poster |
|
Stovner, Endre B |
Pyranges—Efficient comparisons of genomic intervals in Python |
poster/lightning talk |
|
Subramanian, Sai Lakshmi |
ClinGen clinical actionability curation tools, web services and knowledge repository |
poster |
|
Sun, Jiao |
Platform-integrated mRNA isoform quantification |
poster/lightning talk |
|
Surujon, Defne |
Entropy of a bacterial stress response is a generalizable predictor for fitness and antibiotic sensitivity |
talk |
|
Tat, Trinh T |
High-resolution integrative analyses define precise cytoplasmic RNA recapping sites in mammalian cells |
poster |
|
Taylor, James |
Inverting the model of genomic data sharing and analysis with the NHGRI Analysis, Visualization, and Informatics Lab-Space (AnVIL) |
poster |
|
Tello-Ruiz, Marcela K |
Gramene—Comparative genomics, gene expression and pathway reference resources for plant communities |
poster |
|
Tesic, Nikola |
QuagmiR—A cloud-based application for isomiR big data analytics |
poster |
|
Tirado-Oncosalud, Indira |
Identification of housekeeping genes for the transcriptomic evaluation of lung cancer in NGS data |
poster |
|
Tomic, Vladimir |
Evaluation of somatic and germline SV calling tools on simulated and real WGS data |
poster |
|
Treangen, Todd J |
Fast graph-based identification of core and accessory regions in metagenomes via K-Core analysis |
poster |
|
Tseng, Elizabeth |
Full-length transcript characterization for single cell RNA-seq analysis |
talk |
|
Tutaj, Monika |
RGD—Integration of multispecies genetic data for studying human diseases |
poster |
|
Udayakumaran Nair Sunitha Kumary, Vishnu |
Visualization and sequencing of dynamic accessible chromatin during cell cycle and post Romidepsin treatment |
poster |
|
Uno-Antonison, Angelina E |
Methods, challenges, and recommendations for efficient collaboration in analytical bio-software development for clinical genomics applications |
poster |
|
Ursani, Ziauddin |
A computational pipeline for precision variation discovery in repetitive DNA |
poster |
|
Valentine, Matthew |
A transposable element-centric k-mer approach for functional classification of long non-coding RNAs |
poster |
|
Varabyou, Ales |
Annotation-guided alignment of short RNA-seq reads for de-novo transcriptome assembly |
poster |
|
Vigorito, Elena |
Mapping cis-eQTL from RNA-seq data with no genotypes |
talk |
|
Wagner, Justin |
Using long and linked reads to expand the Genome in a Bottle small variant benchmark |
poster |
|
Wang, Liya |
Access to MaizeCODE data via SciApps.org |
poster |
|
Wang, Tingyou |
Comprehensive analysis of exitron splicing in human cancer |
poster |
|
Wang, Yuanyuan |
Elucidating dynamics and regulation of alternative splicing using time-course RNA-seq data |
poster |
|
Weborg, Arthur M |
Efficient dynamic encoding of WGS data for clinical analysis |
poster |
|
Wheeler, Gregory L |
Clonality-aware somatic analysis for improved diagnosis and treatment of complex and recurrent cancers |
poster |
|
Wilk, Brandon M |
PyxisMap—A translational tool for prioritizing genomic variation based on clinical phenotype |
poster |
|
Woolley-Allen, Katherine C |
Integrated homotypic and heterotypic TF binding model points to evolution of combinatorial selectivity in the absence of high-affinity TF binding |
poster/lightning talk |
|
Worthey, Liz |
Identification and interpretation of common and rare variants in relation to rare disease phenotype and outcome |
talk |
|
Wright, Adam J |
MP-BioPath—Accurate prediction of pathway perturbations from curation datasets |
poster |
|
Wright, Sage |
Whole-genome and epigenome analysis of breast cancer cell line T47D |
poster |
|
Wyman, Dana |
A technology-agnostic long-read analysis pipeline for transcriptome discovery and quantification |
talk |
|
Ye, Ping |
Associations between genomic variants of alcohol dehydrogenase genes and fetal alcohol syndromes in the Safe Passage Study |
poster |
|
Yerneni, Satwica |
Spectrum and complexity of clinical bioinformatics requirements for an accredited diagnostic molecular laboratory specializing in hematological malignancy |
poster |
|
Yudanin, Naomi |
Visualizing splicing-driven drug discovery—From theory to target |
poster |
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Yukselen, Onur |
DolphinNext—A graphical user interface for creating, deploying and executing Nextflow pipelines |
poster |
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Yun, Taedong |
Accurate, scalable cohort variant calls using DeepVariant and GLnexus |
poster |
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Zhang, Yida |
Regional variation of splicing QTLs in human brain |
poster |
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Zhou, Naihui |
Exploring the 3D spatial dependency of gene expression using Markov random fields |
talk |
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Zimin, Alexey |
Assembly of sequoia and redwood mega-genomes from Nanopore and Illumina reads |
poster |