|
Presenting Author |
Abstract Title |
Talk/Poster |
|
Abebe, Bethlehem |
Expression and isolation of the Map3 pheromone receptor from yeast for structural and genetic studies |
poster |
|
Adeluwa, Temidayo |
TFXcan reveals transcriptional programs driving complex traits and diseases |
poster |
|
Ahituv, Nadav |
Functional characterization of gene regulatory elements |
talk |
|
Albinana, Clara |
Biobank-scale multi-omic modelling of circadian disruption |
poster |
|
Alkhawaja, Abdalla A |
Integrated analysis of liver cell-type QTL with bulk tissue reveals mechanisms of complex traits |
poster |
|
Almassalha, Luay |
TADs and loops are impossible objects |
poster |
|
Amin, Atia |
Genomic flexibility through extrachromosomal amplicons—A Leishmania survival strategy |
poster |
|
Amorim, Ana Beatriz Silva |
Overcoming challenges in tropical archaeogenomics—A case in early colonial interactions and indigenous enslavement in the Spanish colonized Caribbean |
poster |
|
Amos-Abanyie, Ernestine K |
mtDNA signatures of sex-biased admixture in European-Africans from mid-South US |
poster |
|
Aninta, Sambina Islam |
Variant position modulates functional impact in massively parallel reporter assays |
poster |
|
Aqil, Alber |
Switch-like gene expression modulates disease risk |
poster |
|
Arabzadeh, Mona N |
Advancing scRNA-seq analysis—A new paradigm for graph-partitioning and cluster refinement enables identification of novel malignant cell signatures linked with resistance to immune checkpoint blockade treatments |
poster |
|
Arabzadeh, Mona N |
Distinct monoallelic expression signatures characterize unclassified breast tumors and associate with patient genetic backgrounds |
poster |
|
Arndt, Peter F |
A new Bayesian method to perform demographic inference from genomic data |
poster |
|
Arner, Audrey M |
Exploring the genomic underpinnings of evolutionary mismatch |
poster |
|
Atkins, Thomas K |
Dysregulation of cellular signaling networks upon rapid environment shift |
poster |
|
Audano, Peter |
New assembly-based methods for detecting large complex structural rearrangements in human genomes |
talk |
|
Ayano, Betselot Z |
Comprehensive phylogenomic analysis of mycobacterium tuberculosis in Ethiopia |
poster |
|
Azidane, Sara |
From genomics to neuroanatomy—How CNVs contribute to risk of neurodevelopmental disorders and brain structure alterations |
poster |
|
Bajwa, Ayesha |
Estimating gene mean pathogenicity with prediction-powered inference |
poster |
|
Balachandran, Parithi |
Revealing the extensive allelic heterogeneity and impact of transposable elements across 130 diverse human haplotypes |
poster |
|
Bao, Zhigui |
Understanding mutational processes from Arabidopsis pangenome graphs |
talk |
|
Barbosa, Vanessa de Araujo |
From milk to microbes—A targeted sequencing approach to dairy cattle health |
poster |
|
Belyeu, Jonathan R |
Visualize complex structural variants in HiFi data with SVTopo |
poster |
|
Benjamin, Kynon J |
RFMix-reader—Accelerated reading and processing for local ancestry studies |
poster |
|
Boldon, Naomi |
The role of maternal choline supplementation on offspring behavioral outcomes and gene accessibility in the frontal cortex |
poster |
|
Bono, Hidemasa |
Functional annotation workflow for genome editing of novel model organisms |
poster |
|
Brassington, Layla |
Understanding how urban, industrialized lifestyles modulate the immune response in the Orang Asli of Malaysia |
poster |
|
Bresnahan, Sean T |
Long-read assembly of the placenta transcriptome reduces inferential uncertainty and unveils novel isoforms associated with gestational diabetes mellitus |
poster |
|
Brill, Eva |
Chromatin profiling from formalin-fixed paraffin-embedded samples for biomarker discovery |
poster |
|
Broad, Mia |
POISEN—A bioinformatics pipeline to identify poison exons in long-read transcriptomes |
talk |
|
Brown, Noah J |
Characterizing extrachromosomal DNA in the malaria parasite and its relationship to chromosomal copy number variations |
poster |
|
Byun, Seyoun |
Molecular QTL analysis of expression, splicing, and chromatin accessibility in human chondrocyte identify novel putative osteoarthritis risk genes |
poster |
|
Calabrese, Mauro |
Discovery of RNA domains that harbor related functions using hmSEEKR |
poster |
|
Cao, Yuwei |
Identification of optimal experimental conditions by establishment of single-pot automated (SPA)-ChIP-seq |
poster |
|
Carey, Clayton |
MIC-Drop-seq—Scalable genetic screening of vertebrate development with cellular resolution |
talk |
|
Carilli, Maria |
Estimating cis and trans contributions to differences in gene regulation |
poster |
|
Carioscia, Sara A |
Common variation in core meiosis genes shapes human recombination phenotypes and aneuploidy risk |
poster |
|
Carter, Ava C |
FOS binding sites are a hub for the evolution of activity-dependent gene regulatory programs in human neurons |
talk |
|
Chakraborty, Atreyi |
A genome-wide in-silico motif scan to identify functional clustering |
poster |
|
Chantzi, Nikol |
Characterization of hairpin loops and cruciforms across 118,065 genomes spanning the tree of life |
poster |
|
Chapman, Margaret |
Ancient gene deserts and conserved microsynteny surrounding mammalian neurodevelopmental genes |
poster |
|
Chen, Bide |
Long-read de novo assembly and comparative analysis of six howler monkey genomes within genus Alouatta |
poster |
|
Chen, Nancy |
Dynamics of inbreeding and gene flow in a pedigreed wild population of Florida Scrub-Jays |
talk |
|
Cheng, Haoyu |
Efficient telomere-to-telomere assembly of ONT simplex reads using hifiasm (ONT) |
poster |
|
Chetty, Ashwin |
Widespread effects of medications on gut microbiome composition and function |
talk |
|
Choi, Eunice |
Foxo1 regulates intestinal tissue-resident memory CD8 T cell biology in an anatomic compartment- and context-specific manner |
poster |
|
Chou, Elysia |
Prioritizing noncoding variant-gene pairs in psoriasis using coupled matrix-matrix completion |
poster |
|
Ciccarelli, Francesca |
Spatial drivers of response to cancer immunotherapy |
poster |
|
Clark, Nathan |
History repeats itself—Comparative genomics reveals new genes underlying convergent changes in vision, hair, and sperm locomotion |
talk |
|
Cohen, Alanna B |
Deciphering the autism-associated gene regulatory landscape |
poster |
|
Colantoni, Alessio |
Reference-quality genomes of human cell lines for precision omics |
poster |
|
Colbran, Laura L |
Global patterns of natural selection inferred using ancient DNA |
talk |
|
Cooperstein, Isabelle B |
SimPheny—Integrating large-scale genomic and phenotypic data for rare disease variant prioritization |
poster |
|
Cortes, Miguel |
Transcription start sites experience a high influx of heritable variants fuelled by early development |
poster |
|
Costa, Christina E |
Genetic effects on the transcriptional response to immune challenge in the rhesus macaque |
poster |
|
Das, Arun |
Assembling unmapped reads reveals missing variation in South Asian Genomes |
poster |
|
Das, Jishnu |
Sliding Window INteraction Grammar (SWING)—A generalized interaction language model for peptide and protein interactions |
poster |
|
Das, Jishnu |
Uncovering novel cellular programs and regulatory circuits underlying bifurcating human B cell states |
poster |
|
de Boer, Carl G |
Modeling the evolution of gene regulatory complexity and its role in complex disease |
talk |
|
de Lima Adam, Carolina |
A genome-wide view of Tandem Repeat variation in humans and chimpanzees |
poster |
|
DeGroat, William B |
Constructing cell type-specific enhancer-promoter regulatory interaction networks with massively parallel reporter assays |
poster |
|
Dekovich, Allyson M |
Genomic analyses of hybrids indicate chromosomal inversions maintain genetic differences between fire ant species Solenopsis invicta and S. richteri |
poster |
|
Diaz-Papkovich, Alex |
One year after the All of Us Research Project—Reflections on visualizing human genetic data in biobanks |
poster |
|
Dodge, Tristram O |
Origin and maintenance of a shared sexual mimicry polymorphism |
poster |
|
Dohlman, Anders |
An EGFR hotspot mutation interacts with RBM10 to influence lung cancer risk in East Asians |
talk |
|
Downie, Alexander E |
Disentangling genetic and phenotypic responses to selection in the body mass of wild Kalahari meerkats |
talk |
|
Dudek, Max F |
Greater overlap of caQTLs than eQTLs with GWAS-implicated genes |
poster |
|
Durak, Muhammed Rasit |
The shifting tempo of evolution—Mapping heterotachy across the tree of life |
poster |
|
Eskut, Kaan Ihsan |
Evolutionary insights from germline-specific chromosomes of lamprey and hagfish genomes |
poster |
|
Evrony, Gilad |
Advancing the fidelity and speed of somatic mutation detection |
talk |
|
Eynard, Sonia |
Genetic and epigenetic selection signatures from pool sequencing experiment |
poster |
|
Fang, Lingzhao |
The Farm Animal Genotype-Tissue Expression (FarmGTEx) Project |
poster |
|
Ferguson, Scott |
T2T primate genomes reveal 60 million years of structural variation and karyotype evolution |
poster |
|
Field, Matt A |
Detecting rare somatic cell type specific driver mutations in autoimmune disease using single-cell multi-omic technologies |
poster |
|
Forson, Kwesi |
Compensatory copy number variations in the malaria parasite genome reveal metabolic interplay between antimalarial targets |
poster |
|
Founta, Kyriaki |
Ancestry-driven methylation differences impact immune function regulation in breast cancer |
poster |
|
Francoeur, Eden R |
Segmental duplication-mediated rearrangements alter the landscape of mouse genomes |
poster |
|
Frasier, Connor P |
Multi-omic genomic mapping with long read sequencing |
poster |
|
Frayer, Megan |
Repeated evolution of reproductive isolation in a monkeyflower species complex |
poster |
|
Freed, Donald |
Hybrid short and long-read sequencing affordably enhances genome characterization in difficult regions |
poster |
|
Fuxman Bass, Juan I |
Global cis-regulatory landscape of double-stranded DNA viruses |
poster |
|
Gaitan, Nicolas G |
Anonymized somatic tumor twins (STTs) for open data sharing in cancer genomic research |
poster |
|
Galante, Pedro |
PreciseCaller—A comprehensive, scalable, user-friendly and open-source platform for genomic variant detection in oncology and precision medicine |
poster |
|
Garcia Gonzalez, Judit |
The gene expression landscape of disease genes |
poster |
|
Garrison, Erik |
Reference-free, haplotype-resolved nomination of CRISPR off-targets across global and individual genomic diversity |
poster |
|
Garske, Kristina M |
Detection of early metabolic stress mechanisms driving risk for cardiometabolic disorders in an urban-transitioning Kenyan population |
poster |
|
Gee, Devin |
Characterizing genetic ancestry associated variation in Lynch syndrome genes |
poster |
|
Georgakopoulos-Soares, Ilias |
The repertoire of short tandem repeats across the tree of life |
poster |
|
Georges, Stephanie |
Discovering low-frequency somatic mutations in a craniofacial microsomia patient using RUFUS—A reference-free, Kmer-guided detection algorithm |
poster |
|
Ghatan, Samuel |
CRISPRi perturbation screens and eQTLs provide complementary and distinct insights into GWAS target genes |
talk |
|
Gokhman, David |
Uncovering the role of regulatory variants in human evolution |
talk |
|
Gonzalez-Lopez, Silvia |
A temporal atlas of regulatory activity in the human genome during cell fate transitions |
talk |
|
Goren, Alon m |
Improved spike-in normalization clarifies the relationship between active histone modifications and transcription |
poster |
|
Gravel, Simon |
Genomics in a large human genealogy |
talk |
|
Gray, Olivia |
Genetic and multi-omic insights into inflammation and metabolism in a French Polynesian cohort |
poster |
|
Guerrero Altamirano, Tania P |
Trans-forming our idea of genetic interactions—Does genetic background matter for cis-regulatory activity? |
poster |
|
Gularte Merida, Rodrigo |
Discrete phases of genome evolution underlie sarcomagenesis |
talk |
|
Guler, Jennifer L |
Replication stress increases de novo CNVs across the malaria parasite genome |
poster |
|
Gunarathna, Sakuntha D |
Differential cfDNA enrichment in open chromatin enhances cancer prediction and biomarker discovery |
poster |
|
Gunsalus, Laura |
Compact native promoter design with machine learning-guided miniaturization |
poster |
|
Gutta, Ridhi |
GEMINI—A breakthrough system for robust gene regulatory network discovery, enabling the application of gene regulatory networks to industrial level genetic engineering |
poster |
|
Hacheney, Jessica |
Unveiling non-coding regulatory driver mutations in metastatic melanoma through allele-specific transcription factor footprinting |
poster |
|
Hadas, Yoav |
Characterization of cell type-specific isoform expression in the adult human cortex using long-read RNA sequencing |
talk |
|
Haeussler, Maximilian |
UCSC Track Hub browser adoption and recent improvements |
poster |
|
Haghani, Nadia B |
The genetic basis of a unique structural coloration trait in the platyfish, Xiphophorus evelynae |
talk |
|
Hale, Charles O |
Extensive modulation of a conserved cis-regulatory code across 625 grass species |
poster |
|
Hansen, Soeren B |
Genetic variation and DNA methylation associated with local adaptation in growth rate of Atlantic silversides (Menidia menidia) |
poster |
|
Happ, Hannah C |
Evaluating the dynamics of germline mutation at homopolymers with AVITI sequencing in a large, multi-generational pedigree |
poster |
|
Haque, Taslima |
Effects of trans-acting regulatory mutations on gene expression plasticity and fitness |
poster |
|
He, Yaoxi |
Complete assemblies and pangenome reference reveal unique features in the complex genomic regions of Tibetan highlanders |
poster |
|
Heinz, Jakob M |
Foldback read artifacts in Oxford Nanopore datasets |
poster |
|
Hiatt, Laurel |
Decrypting the colon—Leveraging a triad of techniques to investigate crypt-specific somatic mosaicism |
talk |
|
Hicks, Stephanie C |
Spatially-aware quality control for spatial transcriptomics |
talk |
|
Hitz, Ben C |
The IGVF catalog |
poster |
|
Hoge, Carla |
Characterizing the demographic history of the ecologically important Acropora genus of stony corals |
poster |
|
Holleman, Aaron |
Rare predicted loss-of-function and damaging missense variants in CFHR5 associate with protection from age-related macular degeneration |
poster |
|
Hosseini, Rezwan |
AFconverge—Mapping the hidden regulatory landscape of convergent evolution |
poster |
|
Housman, Genevieve |
Benchmarking pooled cell culture and experimental perturbations for examining regulatory responses across evolutionary scales in primates |
poster |
|
Hu, Hongru |
Identification of rules underlying how individual cell types give rise to convergent phenotypes in the brain |
talk |
|
Hu, Mengying |
DALE-Eval—A comprehensive cell type-specific expression deconvolution benchmark for transcriptomics data |
poster |
|
Huerta-Sanchez, Emilia |
The MUC19 gene in Denisovans, Neanderthals, and Modern Humans—An evolutionary history of recurrent introgression and natural selection |
talk |
|
Huntley, Naomi |
Microbiome-associated host variants act in tissues beyond sampling sites |
poster |
|
Imafuku, Tadashi |
A study of single-cell multiomics based on the analysis of cancer driver mutation diversity |
poster |
|
Jabado, Nada |
H3K27me3 spreading organizes canonical PRC1 chromatin architecture to regulate developmental programs |
talk |
|
Jaganathan, Kishore |
Predicting deleterious promoter mutations with deep learning |
talk |
|
Jakobson, Chris |
A genome-to-proteome atlas charts natural variants controlling molecular and phenotypic diversity |
poster |
|
Jamal, Zoeb N |
Structural variant discovery and characterization from de novo assembly of Khoe-Sān genomes |
poster |
|
James, Benjamin |
Robust inference of co-regulated gene an peak modules from cell type specific single cell data |
poster |
|
Jang, Haerin |
Single-cell eQTL mapping of immune response regulation in systemic lupus erythematosus patients |
talk |
|
Jia, Peilin |
DrugSAGE—An interpretable method for drug response imputation |
poster |
|
Jurotich, Christina |
Global activities of the RNA-dependent ATPase DDX41 in hematopoiesis and cancer |
poster |
|
Kalita, Cynthia |
Single-cell genomics of peripheral immune cells reveals anti-inflammatory gene regulatory mechanisms in older adults with positive psychosocial experiences |
poster |
|
Kalyan Sundaram, Reshma |
Myc and AP-1 oncogenes synergistically bind enhancers to transcriptionally rewire cells |
poster |
|
Kamitaki, Nolan |
Viral DNA load is polygenic and confers lymphoma risk |
talk |
|
Keener, Rebecca |
Mechanisms underlying chromosome end-specific telomere length regulation in humans |
poster |
|
Kern, Andrew D |
Deep learning for population genetics |
talk |
|
Kerner, Gaspard |
Tissue-specific epigenomic profiles inform pleiotropic partitioning of disease loci |
poster |
|
Kesar, Devishi |
Deciphering pediatric glioma subtypes—Super-enhancer dynamics and (epi)genomic insights into cell of origin |
poster |
|
Kim, April |
Bayesian polygenic prediction with a non-parametric functionally informed prior improves prediction of complex traits from genotypes |
poster |
|
Kim, Doyeon |
MicroRNA perturb-seq reveals genome-wide functional targets and deleterious 3’UTR variants |
poster |
|
Kim, Hie Lim L |
From North Asia to South America—Tracing the longest human migration through genomic sequencing |
talk |
|
Kim, Taeho |
Integrating knowledge graph-based drug representation with cancer omics data to improve deep learning models for drug response prediction |
poster |
|
King, Hamish W |
High-throughput target discovery for non-coding autoimmune GWAS loci in primary human immune cells |
talk |
|
Kmiecik, Magda |
Transposable element mediated rearrangements across great ape genomes |
poster |
|
Kodali, Vamsi |
Annotating eukaryotic genomes at NCBI and beyond |
poster |
|
Koehler, Samuel I |
Haplotype phasing and comparative genomics of algae Nannochloris desiccata, Scenedesmus obliquus, Tetraselmis striata |
poster |
|
Koesterich, Justin |
Investigating AIS associated GWAS variant disruptions to gene transcription |
poster |
|
Koo, Peter |
Designing DNA with tunable regulatory activity using discrete diffusion |
poster |
|
Koren, Amnon |
Genetic control of local mutation rates |
talk |
|
Krishnan, Arjun Sai |
Population genomics of the stony coral Acropora millepora across the Great Barrier Reef |
poster |
|
Kuru, Nurdan |
Leveraging ARGs for population-label-free PRS prediction |
talk |
|
Lal, Avantika |
Decoding sequence determinants of gene expression in diverse cellular and disease states |
talk |
|
Lambolez, Alice |
General principles and cell type-specificity of the human RNA-DNA interactome |
talk |
|
Lana Alberro, Mikel |
Characterization of archaic ancestry in 63,000 Japanese individuals from the Tohoku Medical Megabank |
poster |
|
Lawniczak, Mara |
Investigating neglected human malaria parasites from natural infections with single cell and long read approaches |
poster |
|
Lee, Christopher |
UCSC Genome Browser—HubSpace track storage |
poster |
|
Lemanczyk, Marta S |
Mechanistically Interpretable CNNs for Disentangling Genomic Interactions |
poster |
|
Li, Qiuhui |
Novel variant discovery and implications for interpretation from long-read sequencing on 1,027 African Americans in All of Us |
talk |
|
Li, Stacy |
Characterizing de novo structural variation in the aging germline |
talk |
|
Li, Taibo |
Discovery of cell type-specific regulatory networks using single-cell multi-omic analysis of human heterogenous differentiating cultures (HDC) |
poster |
|
Li, Tony |
Functional plasticity and tunability in the evolution of developmental enhancers |
poster |
|
Li, Xintong |
Inference of genetic ancestry from challenging molecular data across multiple experimental strategies |
poster |
|
Lin, Jiadong |
A high-resolution pangenome structural variant resource increases sensitivity for pathogenic variant detection |
poster |
|
Lin, Xiao |
IsoPropeller—An integrated computational framework for analyzing long-read RNA-seq data |
poster |
|
Liu, Boxiang |
Integration and annotation of spatial multi-omic data with DIRAC highlights spatial organization of lymphoid organs |
poster |
|
Liu, Cong |
Multi-lineage transcriptional and cell communication signatures define pathways in individuals at-risk for developing rheumatoid arthritis that initiate and perpetuate disease |
poster |
|
Liu, Jiayi |
Computational framework for predicting the effect of non-coding variation |
poster |
|
Loell, Kaiser |
Thermodynamic surrogate models for interpreting genomic deep neural networks |
poster |
|
Longtin, Amy |
Tissue-dependency of meQTLs in a free-range population of rhesus macaques |
poster |
|
Loucks, Hailey |
Ancient centromere spanning haplotypes provide insight into human centromeric satellite evolution in telomere-to-telomere (T2T) genomes |
poster |
|
Lu, Shuangjia |
Assessing the value of the human pangenome reference for trait association analyses |
poster |
|
Lulla, Suhasini D |
The landscape of germline and somatic cancer variants in tumor suppressor genes. |
poster |
|
Mackay-Smith, Ava |
Exploring hybridization persistence—Gene regulatory dynamics and sex-specific recombination landscapes in Lepidoptera |
poster |
|
MacQuarrie, Kyle L |
TAD-independent changes in chromosome-specific spatial and geometric characteristics occur during myogenic differentiation |
poster |
|
Mancuso, Nicholas |
Efficient count-based models improve power and robustness for large-scale single-cell eQTL mapping |
talk |
|
Mangan, Riley J |
Deep learning predicts cis-regulatory turnover in human evolution |
poster |
|
Marsico, Franco |
Identity-by-descent captures shared environmental factors at biobank scale |
poster |
|
Martin Linares, Cristina |
Explaining the mechanistic framework of SpliceAI using PhantomForest |
poster |
|
Massarat, Arya |
Haplotype-based fine-mapping of variant associations for complex traits |
poster |
|
Matos, Marliette |
Understanding the impact of common variants on the transcriptional regulatory landscape of CD4+ T cells and predisposition to immune-related traits |
poster |
|
Mattioli, Kaia |
Widespread variation in molecular interactions and regulatory properties among transcription factor isoforms |
talk |
|
McConnell, Hunter |
Development of a new method for identification of ancestral alleles from whole genome sequence data |
poster |
|
Meyn, Stephen |
Developing BadgerSeq, an AI-assisted model for ultra-rapid long-read genome sequencing for critically ill infants |
poster |
|
Milind, Nikhil |
Buffering and non-monotonic behavior of gene dosage response curves for human complex traits |
poster |
|
Miraszek, John L |
Archaic admixture refutes the current paradigm of two independent cattle domestications |
poster |
|
Mirmira, Tara |
Multi-study fine-mapping enables identification of shared and ancestry-specific signals driving complex traits |
poster |
|
Mishmar, Dan |
MtDNA mutations differentially affect mitochondrial transcription |
poster |
|
Moore, Jill E |
Dynamic classification of cis-regulatory elements across diverse cellular contexts |
poster |
|
Moreira, Ricardo |
Complete characterization of human polymorphic inversions and other complex variants from long read data |
poster |
|
Mosher, Stephen L |
Enabling genomic research at scale with NHGRI AnVIL—A cloud platform for genomic data analysis |
poster |
|
Mouratidis, Ioannis |
Identification of the shortest species-specific oligonucleotide sequences |
poster |
|
Nair, Surag |
Nona—A unifying multimodal masked modeling framework for functional genomics |
poster |
|
Nassir, Nasna |
Arab Pangenome Reference—Uncovering novel sequences |
poster |
|
Navin, Nicholas |
When is a cancer really a cancer? Aneuploidy in normal breast tissues |
talk |
|
Nayak, Akshatha |
The impact of passenger mutations on cancer development |
poster |
|
Ni, Bohan |
Resolving gene-altering SVs improves the quantification of transcript abundances |
poster |
|
Nozu, Ryo |
New pathway analysis environment using WikiPathways mechanism |
poster |
|
Obih, Chosen E |
Genome-wide association mapping of drought-induced oxidative stress responses in indica rice reveals structural variation in OsAAO2 as a key regulator of ascorbate redox state |
poster |
|
Oh, Dong-Ha |
Developing flexible and scalable visualization of whole genome alignments at NCBI |
poster |
|
Oh, Sungryong |
We interpret congenital heart disorders by comprehensive analysis of cell type-specific gene regulatory program in the early developing human heart |
poster |
|
Ortigas-Vasquez, Alejandro |
The diverse and complex landscape of repetitive elements in viral genomes |
poster |
|
Osato, Naoki |
Functional prediction of DNA/RNA-binding proteins by deep learning from gene expression correlations |
poster |
|
Osato, Naoki |
Systematic discovery of directional regulatory motifs associated with human insulator |
poster |
|
Pajic, Petar |
Evolution of MUC1 exonic variable number tandem repeats |
poster |
|
Pankratov, Vasili |
Sperm competition intensifies purifying selection on spermatogenesis-relevant genes in primates |
poster |
|
Pardo, Katherine |
Characterizing cell-type-specific isoforms using long-read transcriptomics to enhance rare disease variant interpretation |
poster |
|
Park, Eddie |
Origins and implications of intron retention quantitative trait loci in human tissues |
poster |
|
Park, Jiyeon |
Dynamics of RPS24 alternative splicing in breast cancer and therapeutic implications |
poster |
|
Parthiban, Sowmya |
Characterizing Coverage biases in long-read direct RNA sequencing for improved isoform quantification |
poster |
|
Pensch, Raphaela |
Comparative analysis of non-coding constraint mutations in canine and human osteosarcoma reveals a shared underlying disease network |
talk |
|
Perez-Calles, Claudia |
Evolution of toxin resistance in the grasshopper mouse |
poster |
|
Petersen, Rachel M |
Early-life adversity predicts cross-tissue DNA methylation patterns associated with age in rhesus macaques |
poster |
|
Pinello, Luca |
SIMBA+—Dissecting genetic variant function through single-cell multiomics integration |
talk |
|
Poetsch, Anna R |
Per-nucleotide somatic mutation modelling reveals strong patient-specific sequence preference of mutagenesis |
poster |
|
Pott, Sebastian |
Cell-type-resolved chromatin accessibility in the human intestine identifies complex regulatory programs and clarifies genetic associations in Crohn’s disease |
poster |
|
Pozo, Gabriela |
Reference genomes and conservation applications for emblematic and endangered Ecuadorian species |
poster |
|
Raeder, Henry W |
Harnessing drug-induced gene expression changes for improved drug response prediction |
poster |
|
Ramakrishnan, Srividya |
Living fossils—Leveraging single-molecule sequencing to decode the complex genomes of ancient plant lineages |
poster |
|
Ramos-Almodovar, Fabian |
Phylogenetic patterns of context-specific mutation spectra across 113 eukaryotes |
poster |
|
Raptis, Vasilios |
Dissecting the multi-omic risk factors for delirium |
poster |
|
Ray, John |
Genome-wide perturbations link autoimmune genetic risk to primary T cell expression and function |
poster |
|
Raychaudhuri, Soumya |
Functionally defining the gene regulatory effects of complex autoimmune disease alleles |
talk |
|
Reese, Fairlie K |
Long-read transcriptomics of a diverse human cohort reveals widespread ancestry bias in gene annotations. |
poster |
|
Rehmann, Clara |
Sweeps in space—Leveraging geographic data to identify beneficial alleles in Anopheles gambiae |
poster |
|
Rescenko-Krums, Raimonds |
Workflow for polygenic score analysis and visualization from single-sample whole genome sequencing VCF data |
poster |
|
Rivas, Manuel A |
Unified meta regression model for rare variant association studies (RVAS)—Missense pathogenicity, constraint, and loss-of-function |
poster |
|
Rivas-González, Iker |
Admixture dynamics of a hybrid baboon population revealed by near-T2T assemblies |
poster |
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Rizzo, Kaeli |
Enabling large-scale interpretation of genomic foundation models through knowledge distillation |
poster |
|
Rodrigues, Murillo F |
Decoding a complete genomic repository of North American captive marmosets—Insights into recent population history and biology |
poster |
|
Rosen, Jonathan D |
Increased power in eQTL studies helps close colocalization gap with GWAS signals |
poster |
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Rosen, Leah |
Modelling gene dosage response across modalities at single cell resolution |
poster |
|
Rosenski, Jonathan |
An atlas of allele-specific DNA methylation in the human body |
poster |
|
Rotival, Maxime |
Cell-type- and context-specific effects of archaic introgression on modern human immune responses |
poster |
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Rozowsky, Joel |
Predicting allele-specific effects using a local sequence-based transformer model |
poster |
|
Salehi, Farnaz |
Exploring residual heterozygosity in inbred rat strains—How much, where, and why? |
poster |
|
Santana Garcia, Walter |
Nanopore duplex sequencing reveals patterns of asymmetric states of 5hmC and 5mC in the medaka brain genome |
poster |
|
Saraswat, Manu |
DeepGenoXcan—Interpretable deep learning for cell-state-aware sequence-to-expression mapping in personalized genomes |
poster |
|
Sasani, Thomas A |
Fast and furious mutation at tandem repeats in a large, four-generation family |
talk |
|
Scheer, Kendra |
Adaptive increase of amylase gene copy number in Peruvians driven by potato-rich diets |
poster |
|
Sederman, Casey |
Scaling deep learning-based cancer drug response prediction models for precision oncology applications |
poster |
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Seitz, Evan |
Decoding the mechanistic impact of genetic variation on regulatory sequences with deep learning |
poster |
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Serrano, Isabel M |
Investigating the role of mitochondrial DNA in sperm immotility |
poster |
|
Shapira, Kobi |
A-to-I editing generates unparalleled complexity in the neural proteome of cephalopods |
poster |
|
Sharawy, Marwan |
Cell-type-specific age and sex effects on gene regulation in immune responses to viruses |
poster |
|
Shemirani, Ruhollah |
Prevalence of founder groups in the all of us research project and its implications for genomic research |
poster |
|
Sheynkman, Gloria |
New frontiers in proteomics—Technologies to illuminate proteoforms in complex traits and disease |
talk |
|
Shivakumar, Vikram |
Mumemto—Efficient maximal matching across pangenomes |
poster |
|
Shtolz, Noam |
Overlapping reading frames within the mtDNA are deeply conserved and associate with a programmed frame shift mechanism |
poster |
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Sim Chin Yee, Faith |
Oral microbiome diversity across different ethnicities in Thailand |
poster |
|
Singh, Amartya |
Effective single cell counts analysis—Feature selection in the original genes space and choice of number of coordinates in reduced dimensions principal components space hold the key |
poster |
|
Smeds, Linnea |
Non-canonical DNA in human and other ape telomere-to-telomere genomes |
poster |
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Solvason, Joseph J |
Enhancer grammar of developmental enhancers |
poster |
|
Song, Dongyuan |
spCorr models spatially variable gene co-expression patterns in spatial transcriptomics |
poster |
|
Song, Janet |
Uncovering gene regulatory differences between human and chimpanzee neural progenitors |
talk |
|
Spealman, Pieter |
Long-read transcriptomics of differentiating neurons identifies cell type specific splice isoforms with functionally distinct regulatory elements and encoded peptides |
talk |
|
Sridharan, Samvardhini |
Worldwide patterns of diversity at the 17q21.31 locus in modern and ancient human genomes |
poster |
|
Srivastava, Rachita |
Comparative demographic analysis of Cardamine hirsute and Arabidopsis thaliana |
poster |
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Staklinski, Stephen J |
Bayesian inference of the metastasis graph from cancer cell lineage tracing data |
poster |
|
Stamper, Ericca |
LinkPrep™—A rapid high-resolution method that improves chromatin conformation data |
poster |
|
Su, Bing |
3,023 human genomes from mainland Southeast Asia disclose hidden genetic diversity and signatures of tropical adaptation |
poster |
|
Sudmant, Peter |
The evolution of structural and single nucleotide mutation across haplotype-resolved vertebrate genome assemblies |
talk |
|
Sun, Qi |
A large language model (LLM) constructed from global Vitis haplotype alleles and its applications |
poster |
|
Swanson, Elliott |
Comprehensive diploid chromatin map of a single cell using deaminase-assisted fiber-seq (DAF-seq) |
talk |
|
Syam, Aditya |
GrgPhenoSim—A phenotype simulator for genotype representation graphs |
poster |
|
Takahashi, Hazuki |
Cap-Trap full-length cDNA sequencing uncovers novel cell type-specific capped transcripts and diverse coding and non-coding RNA isoforms |
poster |
|
Thakur, Jitendra K |
Mouse and human centromeric and pericentric satellites share a common evolutionary trajectory |
poster |
|
Thompson, John |
Electronic genome mapping for verifying somatic structural variants |
poster |
|
Tijjani, Abdulfatai |
Functional and epigenetic characterization of African pan-genome contigs—Implications for reference genome bias and human genomic diversity |
poster |
|
Timoshevskaya, Nataliya |
Dissecting functional elements in giant genomes using the first generation of high-quality salamander assemblies |
poster |
|
Torres, Maria de Lourdes |
Insights into the genetic diversity and adaptation mechanisms of the Andean blueberry to extreme environments using genomic approaches |
poster |
|
Tovar, Adelaide E |
Assessing cellular contexts of type 2 diabetes-associated variants at scale |
poster |
|
Tran, Hanh |
SCiMS—Sex calling in metagenomic sequences |
poster |
|
Tsambos, Georgia |
Detecting germline mutations in low-coverage sequence data using pedigrees |
poster |
|
Twersky, Itamar |
Extensive ADAR-mediated RNA editing shapes KRAB-ZFP diversity through dynamic modification of DNA-binding domains |
poster |
|
Uzun, Yasin |
A novel framework for building cell-specific gene regulatory networks with single-cell multi-omics |
poster |
|
Van der Heiden, Anna Darlene |
Non-coding mutations in diffuse large B-cell lymphoma—A cross-species study |
poster |
|
Vasilopoulou, Christina |
IndiGene (GENEtics of INDIviduality)—RNA-seq analysis of selected tissues and different environments in Medaka fish |
poster |
|
Vaz, Eduarda |
Neural network models predict protein levels from sequences across individuals and genes |
talk |
|
Vazquez, Juan M |
Extensive structural variation and longevity-associated adaptations in nearctic Myotis bats |
poster |
|
Vilgalys, Tauras P |
Immune pleiotropy and evolution in the response to Yersinia pestis |
poster |
|
Walawalkar, Isha |
Investigating how poison exons modulate alternative splicing to shape transcriptomes in pluripotency and differentiation |
poster |
|
Walia, Sumit |
Compressive pangenomics using mutation-annotated networks |
poster |
|
Wall, Jeff D. |
Estimating recent population split times in non-panmictic populations |
poster |
|
Wang, Lingfei |
Airqtl dissects cell state-specific causal gene regulatory networks with efficient single-cell eQTL mapping |
poster |
|
Wang, Ruoyu |
Single-molecule sequence models to decode the regulatory genome |
poster |
|
Wang, Shuyue |
Revisit global expression change in single-cell perturbation data |
poster |
|
Wang, Xiaoyue |
Comprehensive functional assessment of NF1 and NF2 variants with high-resolution base editing screens |
poster |
|
Wang, Xiaoyue |
COUTURE—facilitating interpretation from genotype to molecular and functional phenotype in single-cell CRISPR screening |
poster |
|
Wang, Zishan |
Allele specific expression in Alzheimer's disease |
poster |
|
Watowich, Marina M |
Industrialization influences biological and molecular mechanisms of aging in immune cells in three non-industrial populations |
poster |
|
Wright, Sarah N |
Network-level convergence of rare and common variants underlying complex traits |
poster |
|
Xia, Bo |
High-throughput in silico screen discovered novel regulators of 3D genome organization |
poster |
|
Xie, Zhuorui |
Characterization of codon and amino acid frequency variation in the human genome |
poster |
|
Xing, Jiawei |
A computational modeling framework for single-cell gene expression evolution leveraging lineage phylogeny of metastatic cancer |
talk |
|
Xu, Huilin |
Defining the landscape of poison exons and their involvement in human diseases |
poster |
|
Xu, Ke |
chronODE—A framework to integrate time-series multi-omics data based on ordinary differential equations combined with machine learning |
poster |
|
Xu, Tianyao |
A novel framework for multiplex measurements of the abundance and interaction of proteins |
talk |
|
Yakymenko, Illya |
On the accurate imputation of common inversions in the human genome |
poster |
|
Yang, Xiaoxu |
Reconstruct human clonal development with mosaic variants |
poster |
|
Yao, Jianing |
Spatial domain detection using contrastive self-supervised learning for spatial multi-omics technologies |
poster |
|
Yu, Zhezhen |
Expanding the readable genome—A novel approach for analyzing mononucleotide C repeats |
poster |
|
Zarnick, Samantha M |
Assessing the impact of genetic variation on chromatin interaction during brain development |
poster |
|
Zeberg, Hugo |
When archaic genes boost growth—The Neanderthal growth hormone receptor |
poster |
|
Zeng, Xin |
Genome-wide inference of position-specific elongation rates using time-course nascent RNA-seq data |
poster |
|
Zhang, Alouette |
Exploring selective scanning with Dz statistic—Simulation and empirical studies |
poster |
|
Zhang, Xua |
Systematic analysis of the impact of short tandem repeats on gene expression |
talk |
|
Zhigulev, Artemy |
The role of rare non-coding variants in bicuspid aortic valve pathology |
poster |
|
Zhu, Chumeng |
Deep learning deciphers the regulatory grammar of transcription initiation in non-model immune cells |
poster |
|
Ziaei Jam, Helyaneh |
Improving genetic score portability and causal variant detection through a novel joint Bayesian framework |
poster |
|
Zulawinska, Julia |
Studying the emergence of de novo copy number variations in malaria parasite Plasmodium falciparum with long-read sequencing |
poster |