|
Presenting Author |
Abstract Title |
Talk/Poster |
|
Abbasi, Mohammad |
Reduced representation of microglial heterogeneity in spatial context |
poster |
|
Abdelkareem, Aly |
Leveraging topic modeling to deconvolve cell programs in complex spatial transcriptomic data |
poster |
|
Abdennur, Nezar A |
Breaking the silo—Composable bioinformatics through cross-disciplinary open standards |
poster |
|
Afgan, Enis |
Cost estimation for bioinformatics analysis jobs in the cloud |
poster |
|
Aggarwal, Manu |
Large deviation evolutionary pathways in the dynamic fitness landscape of proteins |
poster |
|
Amin, Samir B |
High-content CRISPR-Cas9 imaging screen identifies aneuploidy drivers in pediatric high-grade glioma. |
poster |
|
Andersson, Robin |
Mapping enhancer-gene regulatory interactions in single cells |
talk |
|
Aninta, Sambina Islam |
Data leakage from genomics foundational models inflates downstream model performance |
poster |
|
Arab, Abolfazl |
A path toward development of FunGI – Functional Genomics Interpreter |
poster |
|
Arts, Julian |
Developing a robust machine learning pipeline for predicting corneal cell states using a meta-atlas |
poster |
|
Asimomitis, Georgios |
Deriving patient similarity networks in myeloid neoplasms using multi-modal representation learning |
poster |
|
Aso, Hirofumi |
Development of an antimicrobial resistance tracer for pandemic preparedness |
poster |
|
Awan, Ahmed H |
Accessible, reproducible, and scalable workflows in Galaxy |
poster |
|
Ayalew, Mentewab |
BioDIGS—Filling the gaps in soil biodiversity through an inclusive research and education community |
talk |
|
Baharav, Tavor Z |
Statistical Integration of bulk and single-cell sequencing for improved TCR repertoire analysis |
poster |
|
Barth, Dylan |
An analysis of high-dimensional transcriptomic data in hibernating golden-mantle ground squirrels |
poster |
|
Biswas, Arabdha |
Improving LDL-C accuracy with the integration of multi-ancestry polygenic risk scores |
poster |
|
Blankenberg, Daniel J |
Biologist friendly protein structure prediction with quantum computing |
poster |
|
Bollas, Audrey E |
VarRNA—Variant calling from RNA-seq data reveals allele-specific differential expression of pathogenic cancer variants |
poster |
|
Boratyn, Greg |
New NCBI BLAST databases improve search time and results |
poster |
|
Bowden, Jack |
Genetics identifies obesity as a shared risk factor for co-occurring multiple long-term conditions |
talk |
|
Brenerman, Boris |
Shallow transformer structure—Layers are for onions |
poster |
|
Burhans, Richard C |
Nextflow workflows as Galaxy tools—Costs and benefits |
poster |
|
Carroll, Robert |
Standardized phenotypic data to support high-throughput phenome-genome hypothesis generation and testing |
talk |
|
Chaffer, James W |
CZ CELLxGENE Discover—Analytical platform and the largest repository of standardized single-cell expression data |
poster |
|
Chan, Thomas |
Applications of CITE-seq data integration for improved clustering and cell typing of RNA-seq data |
poster |
|
Chao, Kuan-Hao |
OpenSpliceAI and Splam—Enhancing splice site prediction across species to improve transcriptome assembly |
poster |
|
Charalampopoulos, Alexis-Tzianni |
Biology-informed graph neural networks—Embedding biology into artificial intelligence |
poster |
|
Christidis, Anthony |
scDiagnostics—Ensuring reliable annotation transfer in single-cell RNA-sequencing data analysis |
poster |
|
Conesa, Ana V |
SQANTI+—A comprehensive framework for analyzing long-read transcriptomics data |
talk |
|
Constantine-Cooke, Nathan S |
Characterizing heterogeneity in inflammatory bowel disease via routinely collected longitudinal biomarkers |
poster |
|
Cruz Setzekorn, Alejandro |
Characterizing adrenal cancer patients using gene patterns biclustering methods |
poster |
|
Cumbo, Fabio |
Investigating the hidden diversity of viruses in metagenomic samples with MetaSBT |
talk |
|
Das, Arun |
Diversity and representation of South Asian genomes |
poster |
|
Davis, John |
Data access at "Galactic" scale—Lessons learned from a million lines of code |
poster |
|
Dey, Aonkon |
Identifying novel CAR T therapy targets to treat thyroid cancers using single cell RNA-seq data |
poster |
|
Duan, Xiaoyu |
Biological data modeling and parameter inference with deep learning |
poster |
|
Dutta, Pratik |
Prediction of cancer somatic mutations that impact gene regulatory elements by application of DNABERT fine-tuned models on whole genome sequencing data |
poster |
|
Faini, Angelo Corso |
Integrative analysis of prostate cancer transcriptomic data reveals prognostic gene signatures enriched in lncRNAs |
poster |
|
Fang, Cindy |
Spatial integration of cross-platform spatial transcriptomics data using two-stage label transferring |
poster |
|
Fang, Weixiang |
A model for single-cell division and state transitions during development—Bridging cell state manifolds and phylogenies |
poster |
|
Farmer, Rohit |
Epitope mapping using Phage Immunoprecipitation Sequencing (PhIP-Seq) for probe design |
poster |
|
Firtina, Can |
Rawsamble—Overlapping and assembling raw Nanopore signals using a hash-based seeding mechanism |
talk |
|
Fletez-Brant, Kipper |
Unlocking GWAS causal cell types using DNA sequence model |
poster |
|
Gaither, Jeff |
The PrecisionFDA AutoML challenge—Is AutoML ready for clinical healthcare? |
poster |
|
Ghaffari, Noushin |
Examining the effects of analysis parameters on identification of phenotypic characteristics of seals |
poster |
|
Ghazi, Andrew R |
Modeling the association of strain variation with host health in 1,262 colorectal cancer metagenomes using ANPAN |
talk |
|
Gilad, Yoav |
Genetic regulation in motion—Unlocking disease mechanisms with heterogeneous differentiating cultures |
talk |
|
Goecks, Jeremy |
Transforming the Galaxy computational workbench with artificial intelligence |
talk |
|
Goel, Manish M |
Pantohap—Using a pangenome haplotype graph to create pseudo-genome assemblies of domesticated species |
poster |
|
Gohel, Chiraag |
COMETS Analytics—An open-source tool for single and multi-cohort metabolomic analyses in epidemiological studies |
talk |
|
Gohel, Chiraag |
massSight—An R package for integrating and scaling LC-MS metabolomics data across studies |
poster |
|
Gulhan, A. Burak |
KegAlign—Optimizing pairwise alignments with diagonal partitioning |
poster |
|
Gumi, Abubakar M |
Genome-wide analysis of DREB gene subfamily in African rice (Oryza glaberrima Steud) revealed conservation of a single transcript and genes contraction |
poster |
|
Gupta, Aditya |
Characterizing structural variants associated with striatum eQTLs and addiction phenotypes in diverse mouse genomes |
poster |
|
Gursoy, Gamze |
A secure and scalable ecosystem for transcriptome analysis |
talk |
|
Halder, Suvankar |
Using deep learning to map gene expression data into patient-specific dynamic models—A liver donor case study |
poster |
|
Hamilton, Samuel D |
A bulk RNA-seq metric of transcriptional plasticity is associated with clinical outcomes in pneumonia patients |
poster |
|
Han, Yoojung |
Rapid precision diagnosis of repeat expansion disorders by Cas9-enrichment and long-read sequencing |
poster |
|
Hansen, Kasper D |
Analyzing allele-specific DNA methylation using Oxford Nanopore long-read DNA sequencing |
talk |
|
Hansen, Kasper D |
Genotype prediction of 336,463 samples from public expression data |
poster |
|
Hicks, Stephanie C |
Spatially-aware quality control for spatial transcriptomics data |
poster |
|
Hollenberg, Michelle A |
Multiplexed immunofluorescence analysis pipeline |
poster |
|
Hosseini, Noshad |
Divergent clonal evolution and early dissemination promotes genetic diversity of metastases in castration resistant prostate cancer |
poster |
|
Huang, Ziwei |
hypeR-GEM—A tool for connecting metabolic signatures to (enzyme-coding) genes via genome-scale metabolic models |
poster |
|
Huo, Bingxing |
A scalable cloud-based framework for multi-modal neuronal cell type mapping |
poster |
|
Hutchins, Shaurita |
Identification of drug targets in pulmonary arterial hypertension using gene expression signature reversal and mechanism of action |
poster |
|
Hwang, Hyeyeon |
Graph-based deep learning of single-cell surprisal analysis data reveals ATF3 as a regulator of CHI3L1-treated glioma stem cells |
talk |
|
Jacques, Pierre-Etienne |
Metadata prediction from harmonized data validated and complemented over 56,000 public epigenomic datasets |
poster |
|
Jacquin, Nicolas |
Reconstructing transcriptomic profiles from short k-mers using machine learning |
poster |
|
Jain, Atishay |
Improved spatial transcriptomics clustering with nested graph neural networks |
poster |
|
Jajoo, Aarti |
Impact of distribution of continental level ancestral samples in gene-expression reference panels on TWAS analysis—Applications in psychiatric disorders |
talk |
|
Jangi, Radhika |
Modeling branching trajectories facilitates discovery of dynamic genetic effects from multi-omic sequencing of heterogeneous differentiating cultures |
talk |
|
Jenike, Katharine M |
Solanum pan-genomics and pan-genetics reveal paralogs as contingencies in crop engineering |
talk |
|
Ji, Caleb |
Inferring causal genes at genome-wide association study risk loci via machine learning on biological networks |
poster |
|
Ji, Yuge |
Scalable and universal prediction of cellular phenotypes |
poster |
|
Jia, Ruize |
Exploration of dimension reduction techniques for clustering spatial transcriptomics data |
poster |
|
Joshi, Jayadev |
GiN—Bridging Galaxy and JupyterLab for advanced omics data analysis workflows |
poster |
|
Kamath, Sudhanva S |
Telomere-to-telomere assembly by preserving contained reads |
poster |
|
Kambhampati, Sandeep |
TissueMosaic enables cross-sample differential analysis of spatial transcriptomics datasets through self-supervised representation learning |
poster |
|
Kasukawa, Takeya |
fanta.bio—A database of functional annotations for transcriptional activities of cis-regulatory elements (CREs) in human and mouse genomes |
poster |
|
Kaur, Gurpreet |
Integrative genomic characterization of a rare pediatric differentiated thyroid cancer from FFPE samples using RNA sequencing and whole exome sequencing |
poster |
|
Killian, Jackson A |
Training deep neural networks to extract tumor signal from cell-free DNA improves early cancer detection |
talk |
|
Kim, Jaehee |
Multi-drug cancer adaptive therapy with deep reinforcement learning |
talk |
|
Kim, Sandy S |
A hierarchical model for identifying CRISPR effects in high-throughput screens |
talk |
|
Kirsher, Douglas Y |
A Plasma Proteomic Biomarker Identification Study using Nanoparticle Mass Spectrometry and Affinity-based Proteomics. |
poster |
|
Klein, Zoe |
Systematic analysis of lncRNAs as drivers and markers of cancer progression and metastasis |
poster |
|
Koo, Peter |
Designing DNA with tunable regulatory activity using discrete diffusion |
talk |
|
Kucher, Natalie |
Training and education in the cloud with the NHGRI AnVIL |
poster |
|
Kumar, Rajnish |
Multitier delineating of CNVs signature in two development stages of human first-trimester placenta |
poster |
|
Kuru, Nurdan |
PHACE—Phylogeny-aware co-evolution |
poster |
|
Lariviere, Delphine |
Universally accessible interactive curation workflows for large genome assembly |
poster |
|
Larsen, Joseph R |
Multimorbidity and its impact in older United States veterans newly treated for advanced non-small cell lung cancer |
poster |
|
Lee, Chen-Yu |
The immune map of lupus nephritis: A spatially-resolved kidney proteomic approach |
poster |
|
Lee, Tyrone |
High-performance visualization software for imaging-based spatial omics data |
poster |
|
LeRoy, Nathan J |
Atacformer—A transformer-based foundation model for analysis and interpretation of ATAC-seq data |
poster |
|
Levo, Michal |
Capturing gene regulation in action—From enhancer looping to transcriptional bursting. |
talk |
|
Li, Mingyuan |
Environmental exposures interact with genetics to affect cell-type specific and dynamic gene regulation in heterogeneous differentiating cultures |
poster |
|
Li, Qiuhui |
CoLoRSdb—An integrated variation frequency landscape in long-read human genomes |
poster |
|
Li, Xuan |
Elucidating conserved brain development methylation signals and cell composition in glioblastoma using combinatorial optimization |
poster |
|
Li, Xuan |
Fair molecular feature selection unveils universally tumor lineage-informative methylation sites in colorectal cancer |
talk |
|
Liang, Wen-Wei |
Transcriptome-scale RNA-targeting CRISPR screens reveal essential lncRNAs in human cells |
poster |
|
Lin, Mao-Jan |
IGLoo—Profiling the immunoglobulin heavy chain locus in lymphoblastoid cell lines with PacBio high-fidelity sequencing reads |
poster |
|
Liu, Zian |
LLMs are biased toward well-studied genes |
poster |
|
Loell, Kaiser |
Learning genotype-phenotype maps and global nonlinearities from genome-wide datasets |
poster |
|
Lu, Chenyue |
Deciphering gene programs underlying nuclear atypia in colon cancer progression |
poster |
|
Lu, Yang |
BioMANIA—Simplifying bioinformatics data analysis through conversation |
poster |
|
Lu, Yang |
Error-controlled non-additive interaction discovery in machine learning models |
talk |
|
Lucaci, Alexander |
CAMP—Core analysis metagenomics pipeline—A modular metagenomics analysis system for integrated multi-step data exploration |
poster |
|
Luo, Lucy |
Machine learning analysis of transbronchial biopsies histology predicts acute cellular rejection |
poster |
|
Luo, Yunhai |
FAIR computational workflows supporting Genentech lab in the loop |
poster |
|
Ma, Junjie |
Using a comprehensive long-read analysis to reveal the role of gut microbiota in shaping intestinal isoform profiles |
poster |
|
Mahajan, Daanish |
An information-theoretic approach to diploid genome assembly |
poster |
|
Mahfuz, Ayesha |
The application of AncestralClust for optimal DNA probe design in environmental samples |
poster |
|
Majidian, Sina |
EvANI—Genomic distance evaluation pipeline and benchmarking dataset |
poster |
|
Mamede, Izabela |
Long non-coding RNAs as regulators of immune response in Ebola virus vaccine-induced immunity—A multi-cohort transcriptomic analysis |
poster |
|
Marschall, Tobias |
From variant calling to pangenome-based genome inference |
talk |
|
Martí-Gómez, Carlos |
Learning sequence-function relationships with scalable and biologically interpretable gaussian process models |
poster |
|
Martin Linares, Cristina |
Uncovering the inner workings of black box models with PhantomForest |
talk |
|
Mayeaux, McKenzie A |
The role of CD4+ T cells in triple negative breast cancer recurrence following radiotherapy |
poster |
|
Minkin, Ilia |
Conservation assessment of human splice site annotation based on a 470-genome alignment |
poster |
|
Mooney, Thomas B |
Automated framework for quality control in the AnVIL |
poster |
|
Mosher, Stephen L |
A unified computing environment for genomics data storage, management, and analysis—NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-Space (AnVIL) |
poster |
|
Murthy, Mukundh N |
Linking gene expression to longitudinal aging and metabolic phenotypes through archival blood single-nuclei sequencing |
poster |
|
Muthukumar, Shivani |
Evaluating the alignment between explainable AI and predictions of deep learning models in genomics |
poster |
|
Nammi, Deepthi |
Integrative analysis of gene expression and isoform switching induced by changes in neuronal activity |
poster |
|
Naqvi, Sahin |
Transfer learning reveals sequence determinants of the quantitative response to transcription factor dosage |
poster |
|
Newbury, Abigail M |
The effects of electronic health record phenotyping on genome-wide association study findings |
poster |
|
Ng, Jeffrey K |
Identifying differences in proteome-wide clustering of missense variants in cancer and neurodevelopmental disorders |
poster |
|
Nguyen, Matthew |
Long-read sequencing facilitates the assembly of soil metagenomes |
poster |
|
Nguyen, Tram |
AlphaMissenseR—An integrated framework for investigating missense mutations in human protein-coding genes |
poster |
|
Nimz, Kinga |
Epigenetic profiling of estrogen receptor status in ductal carcinoma in situ (DCIS)—Insights from DNA methylation and functional analysis |
poster |
|
Nonchev, Kalin |
DeepSpot—Leveraging spatial context for enhanced spatial transcriptomics prediction from H&E images |
poster |
|
Nonchev, Kalin |
Towards modeling the DNA language in its full diversity |
poster |
|
Nouri, Nima |
single-cell RNA-seq data augmentation using generative Fourier transformer |
poster |
|
Obermayer, Alyssa |
Analysis of clonal heterogeneity within paired primary and metastatic tumor samples of patients with solid tumors and implications for neoantigen-based personalized cancer vaccines |
talk |
|
Odugbemi, Adeshina I |
Quantitative coding mutations in predictive modeling of cancer drug response |
poster |
|
Olivieri, Julia E |
Beyond differential gene expression—The case for equivalence testing in RNA-seq data analysis |
poster |
|
Omdahl, Ashton R |
Matrix factorization of GWAS summary statistics adjusted for sample overlap improves interpretation of shared genetic architecture |
talk |
|
Pai, Athma A |
From noise to signal—Quantifying stochasticity in mRNA splicing |
talk |
|
Parks, Benjamin |
BPCells—Scaling single cell analysis to millions of cells |
talk |
|
Pattinson, David |
Flexible and powerful antibody dynamics models with abdpymc |
poster |
|
Pekker, David |
A dose-response model for accurate detection and quantification of transcriptome-wide gene knockdown for oligonucleotide-based medicines |
poster |
|
Periwal, Vipul |
Functional insights from global sensitivity analysis of deep learning applied to single cell annotation |
poster |
|
Phan, Lon |
Evolution and future directions of dbSNP—A cornerstone of genomic research |
poster |
|
Piccolo, Stephen R |
Using language models to find gene-expression datasets |
poster |
|
Pickard, Joshua M |
AI-powered automated biology lab |
poster |
|
Pollard, Katie S |
Sequence-to-activity modeling |
talk |
|
Prabakaran, R |
Deciphering enzymatic potential in metagenomic reads through DNA language model |
poster |
|
Pybus, Alyssa |
Spatial analysis of multiplex protein markers within the tumor microenvironment to predict response to immunotherapy |
poster |
|
Rafi, Abdul Muntakim |
Detecting and avoiding homology-based data leakage in genome-trained sequence models |
poster |
|
Rafi, Abdul Muntakim |
Evaluation and optimization of sequence-based gene regulatory deep learning models |
talk |
|
Rahman, Raza Ur |
Deciphering the cellular mosaic of the human liver through single nucleus RNA sequencing, with a focus on cell types, zonation, and sex-specific variances |
poster |
|
Ramachandran, Sohini |
Family ties—Methodological challenges and opportunities generated by relatives in biobanks |
talk |
|
Rangwala, Sanjida |
MCGV, a new NCBI viewer for analyzing multiple genome alignments |
poster |
|
Raphael, Ben |
Maximum likelihood inference of time-scaled cell lineage trees with mixed-type missing data |
talk |
|
Revsine, Mahler |
Transformer transparency—Deciphering the decision-making process of genomic Large Language Models |
poster |
|
Sahu, Anshupa |
Identifying biomarkers associated with resistance to immune checkpoint inhibitors from molecular subtyping of non small cell lung cancer patients genomics data |
poster |
|
Sahu, Divya |
Development of a polygenic score predicting drug resistance and patient outcome in breast cancer |
poster |
|
Sajonia, Isabelle R |
Automated behavioral assessment of GLP-1R agonists in mice |
poster |
|
Salinas, Dennis |
BCL11A activates proliferative youth-associated gene networks in human glial progenitor cells |
poster |
|
Sapoval, Nicolae |
High-fidelity lightweight taxonomic profiling of long-read metagenomic datasets |
poster |
|
Sathian, Rekha |
DNABERT-Enhancer—Sequence based prediction of enhancers and identification of SNPs that impact the enhancer function |
poster |
|
Savage, Michelle |
Enhancements to UseGalaxy.org Client-Facing Error Reporting for Optimized Functionality and Risk Mitigation |
poster |
|
Schaefer, Moritz |
Multimodal learning of transcriptomes and text enables interactive RNA-seq data exploration with natural-language chats |
talk |
|
Schroth, Gary |
Novel multi-modal technology that generates integrated cell function and sequencing data at scale |
poster |
|
Seitz, Evan |
Deciphering the determinants of mechanistic variation in regulatory sequences |
poster |
|
Sen, Sagnik |
NICKL—A deep learning pipeline for measuring chromatin accessibility from NicE-view-Seq images |
poster |
|
Shah, Kinnary H |
Statistical method to rank spatially variable genes adjusted for mean-variance relationship |
poster |
|
Shakyawar, Sushil Kumar |
iCluF—An unsupervised iterative cluster-fusion method for patient stratification using multiomics data |
poster |
|
Shan, Yuting |
Deciphering sex differences in cancer treatment response and survival outcomes by studying intratumoral microbiome-host interactions |
poster |
|
Sharma, Dinesh |
A novel physicochemical property-based exon-intron boundary prediction method |
poster |
|
Sharma, Era |
Discovering hidden genomes—A new software tool and new approach for NCBI SRA mining |
poster |
|
Shi, Hongyi |
Motif-weighted structure alignment for classification and evolutionary studies of carbonic anhydrase |
poster |
|
Shinder, Ida |
StringTie’s nascent mode improves RNA-seq assembly by integrating co-transcriptional splicing |
poster |
|
Shiraishi, Yuichi |
Enhancing short-read sequencing data for centromere analysis via rarely observed k-mer markers |
poster |
|
Shurberg, Ethan |
Somatic and transcriptional variation across genetic ancestries in EGFR-mutant lung adenocarcinoma |
poster |
|
Simons, Yuval B |
Robust detection of global and idiosyncratic epistasis |
poster |
|
Singh, Amartya |
Improving single-cell gene expression analyses with Piccolo |
poster |
|
Sinha, Irika |
Large-scale RNA-seq mining reveals ciclopirox triggers TDP-43 cryptic exons |
talk |
|
Smeds, Patrik |
Enhancing GenomeArk user experience and capabilities |
poster |
|
Stein, Daniel J |
Accurate, fast, and automated tissue segmentation in high dimensional and multi-sample spatial transcriptomics data with Tessera |
talk |
|
Subramanian, Madhan |
A collaborative analytic enclave for the Metabolic Dysregulation and Obesity Cancer Risk Program (MeDOC) Consortium—Extensions of the OMOP common data model for translational research |
poster |
|
Subramanian, Rohan |
Boolean networks reveal opposing roles of SLC22A5 and SLC22A15 in inflammatory bowel disease |
poster |
|
Sultana, Zeba |
Single-cell spatial atlas of immune and kidney cell states in human rapidly progressive glomerulonephritis |
poster |
|
Sun, Mengyi |
Quantifying the impact of AI on science—Insights from structural biology |
poster |
|
Surana, Pallavi |
Personal genome variant interpretation score for predicting lung cancer risk |
poster |
|
Suzuki, Takayuki |
Exploring Parkinson’s disease candidate target genes using unknomics and transcriptomics |
poster |
|
Swan, Jeffrey A |
Mechanistic classification of the AAA+ superfamily using protein language models |
poster |
|
Sweet, Philip |
Benchmarking computational tools for calling SNPs and Indels in complex microbial populations |
poster |
|
Sweeten, Alexander |
Automated annotation of satellite DNA |
poster |
|
Syed, Maha |
plinkQC—A genomic ancestry and quality control R/CRAN package |
poster |
|
Tanwar, Deepak K |
Uncovering the epigenetic landscape—Methylator, a comprehensive framework for analyzing DNA methylation across species, library preparations, with application to plant adaptation |
poster |
|
Tenenbaum, Debora |
Defining and programming transcriptional activatability in bacterial promoters |
poster |
|
Tirumalasetty, Munichandra B |
The role of retinoid X-receptor α (RXRα) deficiency in promoting ferroptosis in the liver—Evidence from bulk and single-nucleus transcriptomics |
poster |
|
Tu, Zhijian J |
Sex-linked markers enable sex-specific single cell analysis during early embryonic development in the dengue fever mosquito Aedes aegypti |
poster |
|
Ustanik, Jack |
CNPI—A computational toolkit for copy number variant analysis of whole-genome sequencing data |
poster |
|
Wan, Zhuoya |
scPerturb—A comprehensive pipeline for single-cell CRISPR screen data processing and analysis |
poster |
|
Wang, Li |
Context-specific brain causal gene networks and application to autism spectrum disease |
poster |
|
Wang, Ruoqiao |
Comparative analysis of single-cell pathway scoring methods and a novel approach |
poster |
|
Wei, Sharon |
Advancing agricultural genomics—Integrating rsIDs for standardized genetic variation and enhanced breeding strategies |
poster |
|
Withnell, Eloise |
SpottedPy quantifies relationships between spatial transcriptomic hotspots and uncovers new environmental cues of epithelial-mesenchymal plasticity in breast cancer |
poster |
|
Wojtyniak, Martin |
Safeguarding genomic data—Addressing cybersecurity and privacy challenges. |
poster |
|
Wu, Yameng |
Predicting and visualizing disease-causal variants in cardiac disease-related protein-coding genes with ML. |
poster |
|
Xiao, Alexander |
Phasing de novo variation in long read sequencing data |
poster |
|
Xue, Bingjie |
BEDbase—A web application and API for genomic region sets |
poster |
|
Xue, Bingjie |
The reninness score—Integrative analysis of multi-omic data to define renin cell identity. |
poster |
|
Xue, Yuan |
5-hydroxymethylcytosine analysis reveals stable epigenomic changes in tumor tissue that enable cancer detection in cell-free DNA |
poster |
|
Yang, Emma |
Gene expression trajectories in human ageing—Insights from single-cell data |
poster |
|
Yang, Lu |
mPower—A real data-based power analysis tool for microbiome study design |
poster |
|
Yap, Qi Jing |
Ex vivo drug sensitivity assays correlate with clinical responses to doxorubicin in canine lymphoma—A study of 385 patients |
poster |
|
Yi, Yuyan |
TB Portals Program—Exploring the association between biochemistry parameters and clinical outcomes in patients with tuberculosis |
poster |
|
Yin, Wei |
Single-cell sequencing of induced pluripotent stem cells origining from patients with genetic diseases reveals the pathogenesis of genetic diseases |
poster |
|
Yu, Doudou |
Single-cell analysis of human hypothalamus in early-stage Alzheimer’s disease |
poster |
|
Yu, Yanying |
CCARES—A completeness, consistency, accuracy, and reproducibility evaluation suite for high-throughput omics data quality |
poster |
|
Yuan, Hao |
ICePop—Identifying disease-affected cell types through network-based analysis of gene module overexpression in single-cell data |
poster |
|
Zakeri, Mohsen |
Sequitur—A space-efficient and versatile method for k-mer queries on pangenomes |
poster |
|
Zhang, Jiaqi |
scMultiNODE—Temporal single-cell data integration and translation across unaligned modalities |
poster |
|
Zhou, Jessica |
Uncertainty-aware genomic deep learning with knowledge distillation |
talk |
|
Zhou, Juannan |
The complexity of protein sequence-function relationships |
poster |
|
Zhou, Yuchen |
Improving disease polygenic risk scores by incorporating MedGemini and thousands of health outcomes |
talk |
|
Zimin, Alexey |
Ultrafast high-quality data-centric genome annotation with EviAnn |
poster |