|
Presenting Author |
Abstract Title |
Talk/Poster |
|
Ahlquist, Kaileigh |
Statistical detection of genomic targets of balancing selection |
poster |
|
Antonio, Margaret L |
Detecting signals of selection in time-series genomic data |
poster |
|
Avadhanam, Siddharth N |
Inferring population ancestry of sample parents using ancestry homozygosity and tract lengths |
poster |
|
Avdeeva, Maria |
Lineage tracing of tumor cells based on copy number aberrations observed from single-cell transcriptomics data |
talk |
|
Balding, David |
Improved models for the genetic basis of complex human traits using association statistics |
talk |
|
Baumdicker, Franz |
Analyzing the genomic pattern of CRISPR defense memory in bacteria and archaea |
poster |
|
Berg, Jeremy J |
Complex disease at mutation-selection-drift balance |
talk |
|
Besenbacher, Søren |
Improved prediction of site specific mutation rates using k-mer pattern partition |
poster |
|
Bloemendal, Alex A |
A method to estimate the sampling variance of genotype principal components and residual confounding due to incomplete capture of population structure |
poster |
|
Bredikhin, Danila |
Multi-group factor decomposition of single-cell transcriptome profiles |
talk |
|
Brock, Kelly P |
Using evolutionary couplings to help accelerate structure determination |
poster |
|
Brown, Richard |
A deep learning model for unbiased splice site prediction |
poster |
|
Browning, Brian L |
Efficient probabilistic modeling of large-scale sequence data |
talk |
|
Browning, Sharon R |
Quantifying uncertainty at the ends of identity by descent segments |
poster |
|
Caggiano, Christa |
Epigenetic state of circulating cell-free DNA as diagnostic biomarker of ALS |
poster |
|
Caldas, Ian Vasconcellos |
Localization, classification, and parameter inference of hard and soft selective sweeps by supervised learning |
poster |
|
Cappello, Lorenzo |
Sequential importance sampling algorithms for multi-resolution Kingman-Tajima coalescent enumeration |
poster |
|
Cartwright, Reed A |
Probabilistic methods for detecting somatic and germline de novo mutations in large pedigrees |
poster |
|
Cheng, Wei |
Estimating gene-level effect sizes from summary statistics |
poster |
|
Clark, Andrew |
The Elston-Stewart algorithm meets wild pedigreed populations |
talk |
|
Darnell, Gregory |
A flexible linear mixed model for estimating heritability of categorical phenotypes |
poster |
|
Davenport, Emily R |
Simultaneously modeling host genetics and microbiome composition reveals the heritability and the proportion of variance explained due to the microbiome of immune-related traits |
talk |
|
DeWitt, William S |
Using ancient Eurasian genomes to trace mutation spectrum evolution |
poster |
|
Drewe-Boss, Philipp |
omniCLIP—Probabilistic identification of protein-RNA interactions from CLIP-seq data |
poster |
|
Dukler, Noah |
Detecting lineage and group-specific selection in cis-regulatory elements |
talk |
|
Durbin, Richard |
New approaches to diploid genome assembly |
talk |
|
Enard, David |
Detecting ancient epidemics in human evolution |
talk |
|
Engelhardt, Barbara |
Experimental design and single cell RNA-sequencing |
talk |
|
Fariello, Maria I |
Retrieving “Charrúas” genomic tracts and structure from the general Uruguayan population |
poster |
|
Fiaux, Patrick C |
Identifying novel regulatory elements using RELICS, a statistical framework for the analysis of CRISPR regulatory screens |
poster |
|
Gao, Ziyue |
Overlooked roles of DNA damage and maternal age in generating human germline mutations |
talk |
|
Gibling, Heather M |
Accurate genotyping in polymorphic repetitive loci using k-mer count profiles |
poster |
|
Gladstein, Ariella L |
Substructured population growth in the Ashkenazi Jews inferred with approximate Bayesian computation |
poster |
|
Goldberg, Michael E |
Diversity and mutational signatures of endogenous retroviruses in great apes |
poster |
|
Green, Anna G |
Computational inference of protein-protein interactions with residue-level resolution at a genome-wide scale |
talk |
|
Greenberg, Anthony |
Methods for robust Bayesian analyses of complex genetic experiments |
poster |
|
Gronau, Ilan |
Bayesian model comparison of population histories |
talk |
|
Guang, August |
Revising transcriptome assemblies with phylogenetic information |
poster |
|
Guo, Weihua |
The relative importance of different drivers of DNA methylation in response to the environment in Phragmites australis |
poster |
|
Gutenkunst, Ryan N |
DFEnitely different—The joint distribution of mutation fitness effects between populations |
talk |
|
Harris, Kelley |
Using archaic introgression to probe enhancer function and evolution |
talk |
|
Hateley, Shannon L |
Variant history discovery through identity by decent connections and family trees |
poster |
|
Hayward, Laura K |
Polygenic adaptation in response to a sudden change in the environment |
talk |
|
Hejase, Hussein |
Inference of selective sweeps using machine learning in rapid avian radiation |
poster |
|
Hernandez, Ryan D |
Rampant purifying selection drives singleton variants to be major source of heritability for human gene expression |
poster |
|
Hoffman, Michael M |
Segway and the Graphical Models Toolkit—A framework for probabilistic genomic inference |
talk |
|
Holmes, Ian |
Boss Machine decodes noisy neural networks and nanopore reads |
poster |
|
Jewett, Ethan M |
Updating an efficient pipeline for local ancestry inference |
poster |
|
Johnson, Kelsey E |
A method to identify recurrent mutations from unphased population-level sequencing data |
talk |
|
Johnson, Ruth D |
A scalable Bayesian model for estimating the genetic architecture of complex traits using summary statistics from GWAS |
talk |
|
Jun, Seong-Hwan |
Accurate reconstruction of tumor phylogeny via joint analysis of bulk DNA and single cell RNA-seq data |
poster |
|
Kelleher, Jerome |
Inferring ARGs for millions of chromosomes |
poster |
|
Koptagel, Hazal |
SCuPhr---A probabilistic framework for cell lineage tree reconstruction |
poster |
|
Kreuzhuber, Roman |
Kipoi—Accelerating the community exchange and reuse of predictive models for genomics |
poster |
|
Krishnaswamy, Smita |
Manifold learning yields insight into cellular state space under complex experimental conditions |
talk |
|
Kumar, Vivek |
High-throughput inference and modeling of biological functions using US DOE Systems Biology Knowledgebase (KBase) |
poster |
|
Lauterbur, M. Elise |
Small effective population size affects coalescent conclusions |
poster |
|
Loh, Po-Ru |
Mosaic chromosomal alterations increase proliferative loads from rare coding variants and common polygenic risk |
poster |
|
Long, Quan |
Less-is-more in integrating multi-scale -omics with polygenic phenotype predictors |
poster |
|
Lunter, Gerton |
Demographic Inference using particle filters indicate late Pleistocene migration from Europe back to Africa |
poster |
|
Maklin, Tommi |
Accurate bacterial genome assembly from multi-strain enrichment cultures |
poster |
|
Marchini, Jonathan |
Scalable Bayesian whole genome regression with interactions to high dimensional environments |
poster |
|
Mathieson, Iain N |
Tracking holocene natural selection using ancient DNA |
talk |
|
McCandlish, David |
Modeling higher-order genetic interactions |
talk |
|
Messer, Philipp W |
Realistic evolutionary simulations for population genetic inferences with SLiM 3 |
poster |
|
Moorjani, Priya |
Evidence for recent increase in human generation time inferred from changes in the mutation spectrum over time |
poster |
|
Morris, Quaid D |
MutPairtree—A novel algorithm for determining the evolutionary history of cancer using multiple tissue samples |
talk |
|
Morrison, Jean V |
Accounting for confounding in Mendelian randomization using genome wide summary statistics |
talk |
|
Moss, Matthew |
The epigenomic dynamics of mammary epithelial cells before, during and after pregnancy—An enhancer based analysis |
poster |
|
Mostafavi, Hakhamanesh |
Decomposing factors that influence the portability of polygenic scores across human populations |
poster |
|
Nanda, Pariksheet |
Transcription rates from Bayesian modeling of nascent RNA time course |
poster |
|
Nelson, Dominic |
An extended msprime coalescent simulation framework avoids biases from large sample sizes, and increases performance when simulating long regions |
poster |
|
Ochoa, Alejandro |
Relatedness and differentiation in arbitrary population structures |
poster |
|
Phung, Tanya N |
Inference of the mutational size supports the omnigenic model for complex traits |
talk |
|
Pimentel, Harold |
Fast intron retention quantitative trait loci discovery |
talk |
|
Plavskin, Yevgeniy |
Distinct distributions of mutational effects on fitness revealed by a model integrating high-throughput phenotype and sequence data |
talk |
|
Prufer, Kay |
Calling genotypes from ancient DNA with snpAD |
poster |
|
Qiao, Ying |
Disambiguating second degree relationships using identity by descent sharing to mutual relatives |
poster |
|
Ragsdale, Aaron P |
Multi-population linkage statistics from exact moment equations |
poster |
|
Ralph, Peter |
Fast computation with tree sequences |
poster |
|
Rice, Daniel |
Distinguishing among coalescent models using two-site frequency spectra |
poster |
|
Salichos, Leonidas |
Identifying growth patterns and driver effects during tumor progression |
poster |
|
Salman-Minkov, Ayelet |
Using ARGweaver to study speciation genomics |
poster |
|
Sankararaman, Sriram |
A statistical model for reference free archaic local ancestry inference |
talk |
|
Sankoff, David |
Birth-and-death with sibling rivalry and the distribution of homologous gene pair similarities in the context of recurrent whole genome doubling, fractionation and speciation |
poster |
|
Sannerud, Jens G |
Inferring the sex of missing parents in second degree relationships using sex-specific recombination maps |
poster |
|
Sarkar, Abhishek |
Discovery and characterization of variance QTLs in human induced pluripotent stem cells |
poster |
|
Schaefer, Nathan K |
Insights from fast, heuristic ancestral recombination graph inference |
poster |
|
Schraiber, Joshua G |
Analysis of selection on domestication-related QTL |
poster |
|
Sedghifar, Alisa |
Performance analysis of Polly, a haplotype model-based approach for estimating admixture in individuals |
poster |
|
Seidman, Daniel N |
Rapid, phase-free detection of long Identical by Descent segments enables fast relationship classification |
poster |
|
Seth, Sahil |
Functional heterogeneity of long-term self-renewing compartment, the origin of treatment resistance |
poster |
|
Shafquat, Afrah |
A hierarchical Bayesian latent variable model for detecting misclassified phenotypes and identifying novel associations in GWAS |
poster |
|
Shahamatdar, Sahar |
Germline variants associated with immune infiltration in solid tumors |
poster |
|
Shchur, Vladimir |
Estimation of population split times and migration rates with variable population sizes |
poster |
|
Shin, June |
Predicting ligand-protein binding partners using probabilistic models of sequences and drugs |
poster |
|
Siewert, Katherine M |
A standardized statistic improves power to detect long-term balancing selection |
poster |
|
Silverman, Justin D |
Statistical and geometric methods for the analysis of sequence count data |
poster |
|
Smith, Samuel A |
Hierarchical clustering reveals differential genetic architecture between immunological and metabolic phenotypes |
talk |
|
Speidel, Leo |
Reconstructing the genealogies of humans and wild mice |
talk |
|
Sugden, Lauren A |
Integrating selection scans across different genomic scales into a single hidden Markov model framework |
talk |
|
Suvorov, Anton |
Learning tree topologies from alignments using convolutional neuronal networks |
poster |
|
Terhorst, Jonathan G |
Massively parallel estimation of local ancestry using GPUs |
poster |
|
Teterina, Anastasia |
Mode of reproduction drives the distribution of polymorphism across the genome—Theory and empirical tests in Caenorhabditis nematodes |
talk |
|
Thornlow, Bryan |
Predicting transfer RNA gene expression from genome variation data |
poster |
|
Turchin, Michael C |
Differences in polygenic architecture between multiple ethnic human populations revealed by pathway and epistasis analysis |
poster |
|
Upadhya, Gautam |
A general coalescent hidden Markov model framework for inferring complex demographic histories |
poster |
|
Vaughn, Andrew H |
Source-sink populations and spurious bottlenecks—Coalescence Ne in the presence of biased migration |
poster |
|
Waples, Ryan K |
Allele frequency-free inference of close familial relationships |
poster |
|
Weinstein, Eli N |
Searching for programmable genetic systems |
poster |
|
Weiss, Clemens |
Targeted retrieval of nuclear grapevine DNA from cave sediments |
poster |
|
Weissbrod, Omer |
Fine-mapping with polygenic functional priors |
poster |
|
Wells, Daniel J |
Decomposition of mouse spermatogenesis at single-cell resolution reveals dynamic transcriptional programs orchestrated by a rich regulatory repertoire |
talk |
|
Williams, Amy |
Inferring parental genomes and parent-of-origin using genotypes from siblings |
poster |
|
Wohns, Wilder |
Estimating the relative age of alleles from population sequencing data |
poster |
|
Wu, Yingzhou |
Improved pathogenic variant detection by learning rules of functional constraint from massively parallel variant effect assays |
talk |
|
Wu, Yue |
Scalable estimation of heritability and genetic correlation for biobank-scale data |
poster |
|
Young, Adamo J |
Genome gerrymandering—Understanding mutational signatures with genome segmentation |
poster |
|
Zhou, Ying |
Constructing recombination maps with identical by decent segments |
poster |