|
Presenting Author |
Abstract Title |
Talk/Poster |
|
Aburatani, H. |
Epigenetic profiling in cellular
differentiation |
poster |
|
Aerts, S. |
Practical identification of regulatory
interactions in Drosophila transcriptional
networks |
poster |
|
Akavia, U. |
Conexic—Combining copy number and gene
expression to uncover dysregulation in melanoma |
poster |
|
Alleyne, T. |
Predicting the binding preference of
transcription factors to individual DNA k-mers |
poster |
|
Amit, I.-. |
The architecture of growth factor
signaling |
poster |
|
Arda, E. |
An intricate network of nuclear hormone
receptors regulates fat and fasting in the nematode
C. elegans |
poster |
|
Bejerano, G. |
Dispensability of mammalian DNA |
poster |
|
Belostotsky, D. |
Genome-wide high-resolution mapping of
exosome substrates reveals hidden features in the
Arabidopsis transcriptome |
talk |
|
Ben-Ari, G. |
Signal specificity in the mating and
invasive growth transcriptional programs in S.
cerevisiae is achieved through differential
regulation of the Dig proteins |
poster |
|
Benfey, P.N. |
Getting to the root of cell identity |
talk |
|
Bengani, H. |
Mining the human genome for components
of cellular memory modules |
poster |
|
Bernstein, B.E. |
Chromatin landscapes of pluripotent and
lineage-committed cells |
talk |
|
Bhatia, S. |
Peptide identity search for
identification of trans-acting chromatin remodeling
factors in the human genome—Characterization and
functional analysis |
poster |
|
Blanchette, M. |
Genome-wide analysis of alternative
pre-mRNA splicing and RNA binding of specificities of
the Drosophila hnRNP A/B family members |
talk |
|
Bolotin, E.l. |
High throughput approach for
determination of HNF4a
binding motifs |
poster |
|
Boorsma, A. |
Inferring condition-specific modulation
of transcription factor activity through regulon-based
analysis of genome wide expression in yeast and human |
talk |
|
Bourque, G. |
The Hitchhiker's Guide to mammalian
transcription factors binding sites |
talk |
|
Bristow, C.A. |
Boolean construction and representation
of spatial patterns in developing tissues |
poster |
|
Burge, C. |
Global patterns in tissue-specific RNA
processing inferred from deep transcriptome sequencing |
talk |
|
Butland, S.L. |
The transcription factor encyclopedia,
Tfe |
poster |
|
Calarco, J.A. |
Identification and characterization of
nSR100, a novel neuronal splicing regulator |
poster |
|
Celniker, S.E. |
Comprehensive characterization of the
Drosophila transcriptome |
talk |
|
Cerase, A. |
Defining Xist RNA binding sites |
poster |
|
Chan, E.T. |
MORE—A new regression-based motif model
evaluation technique |
poster |
|
Chen, B. |
Dissecting the complexity of yeast
growth |
poster |
|
Cheng, D. |
An alignment independent algorithm for
motif discovery using sequence conservation |
poster |
|
Cheng, Y. |
Large scale identification of sites
bound in vivo by GATA-1 on mouse chromosome 7 reveals
major determinants of occupancy |
poster |
|
Chu, D. |
Metabolic control of the sialic acid
metabolism in E. coli |
poster |
|
Chu, J. |
Computational and molecular
characterization of RFX transcription factor mediated
transcription |
poster |
|
Coulombe, B. |
High-precision mapping of the protein
interaction network for the human transcription
machinery reveals a novel class of cellular regulatory
factors |
talk |
|
Cui, H. |
Genome wide target location analysis
reveals a broader role of Shortroot in root development |
poster |
|
Degenhardt, T. |
Defining novel roles for nuclear
receptors |
poster |
|
Dekker, J. |
Comprehensive 5C maps of chromsomal
domains reveal extensive communication between genomic
elements |
talk |
|
Dequeant, M. |
Comparison of the segmentation clock
networks in fish, chick and mouse |
poster |
|
Dimitrova, N. |
In silico prediction of histone
methylation regions in DNA sequences |
poster |
|
Dudley, A.M. |
Systems genetics and posttranscriptional
regulation |
talk |
|
Ernst, J.M. |
A semi-supervised method for predicting
transcription factor-gene interactions in E. coli |
poster |
|
Fang, N. |
Expression profiling of miRNA and mRNA
by real-time PCR |
poster |
|
Fernando, H. |
Targeting a specific promoter
g-quadruplex with a single-chain antibody |
poster |
|
Friedman, N. |
Modularity in genetic interaction
networks |
talk |
|
Fuite, J.J. |
Understanding chronic fatigue using
comparative cross-scale analysis of information networks |
poster |
|
Garmendia-Torres, C. |
P-body dynamics in yeast—A systems
biology approach |
poster |
|
Gerard, M. |
Identification of the regulatory
networks controlled by chromatin remodeling factors in
mouse embryonic stem cells |
poster |
|
Gertz, J. |
Analysis of combinatorial cis-regulation
in synthetic promoters with weak transcription factor
binding sites |
talk |
|
Giaever, G.N. |
A chemical portrait of the yeast S.
cerevisiae—Understanding gene function and drug
action |
talk |
|
Goff, L.A. |
Computationally-predicted regulation of
microRNAs via the PDGF pathway during osteogenic
differentiation of human MSCs |
poster |
|
Goyal, S. |
A quantitative comparison of RNA-based
and protein-based gene regulation |
poster |
|
Grove, C.A. |
An integrated C. elegans bHLH
dimerization, expression and DNA binding specifity
network |
talk |
|
Habib, N.M. |
A novel Bayesian method for DNA motif
comparison elucidates condition-specific DNA binding
mechanisms |
poster |
|
Hanlon, S. |
Promoter architecture dynamically
modulates transcription factor binding and
transcriptional output over time |
poster |
|
Hawkins, D. |
Dynamics of the human embryonic stem
cell epigenome reveal key cis-regulatory elements |
poster |
|
Hawrylycz, M.J. |
Co-expression networks in the C57BI/6J
mouse brain |
talk |
|
Hon, G. |
A genome-wide map of human
transcriptional enhancers |
talk |
|
Hughes, T. |
Complexity and diversity in the
protein-DNA interactome |
talk |
|
Ideker, T.G. |
Mapping gene regulatory pathways by
assembly of physical and genetic interactions |
talk |
|
Iniguez, L. |
A flexible, high-density array platform
for genome-wide characterization of epigenetic and
transcriptional regulatory mechanisms involved in cancer |
poster |
|
Jaimovich, A. |
Automatically inferring a system level
functional view from genetic interaction networks |
poster |
|
Jim, H. |
Identification of target genes of an
erythroid transcription factor complex containing SCL
(TAL1) |
poster |
|
Kainth, P.S. |
A genomic approach to map cell cycle
transcription pathways in S. cerevisiae
|
talk |
|
Kaluarachchi, S. |
Dual regulation by pairs of
cyclin-dependent protein kinases and histone
deacetylases control G1 transcription in budding yeast |
poster |
|
Kertesz, M. |
Roles of RNA structural properties in
microRNA regulation |
poster |
|
Kheradpour, P. |
Identification and evaluation of
mammalian regulatory motifs using comparative genomics
across 19 mammals |
talk |
|
Kingston, R.E. |
Identification of proteins bound to a
genomic locus |
talk |
|
Kinney, J.B. |
Mutual information maximization—A
universal principle for DNA sequence analysis in the
large N limit |
poster |
|
Komorowski, J. |
A novel algorithm and ChIP-analysis
identifies candidate functional SNPs |
poster |
|
Kosucu, H. |
Discovering hairpin RNA motifs using
generative models |
poster |
|
Krishnakumar, R. |
Genomic analysis of gene regulation by
poly(ADP-ribose) polymerase-1 |
talk |
|
Lagha, M. |
Pax3 regulation of FGF signaling affects
the progression of embryonic progenitor cells into the
myogenic program |
poster |
|
Lahesmaa, R. |
Novel insights into the gene regulatory
networks regulating human T helper (Th) cell
differentiation |
poster |
|
Laurent, L. |
Alterations in gene expression
corresponding to recurrent genetic variations observed
in human embryonic stem cell cultures |
poster |
|
Lee, K. |
Multiple approaches for discovery of
transcriptional regulation targets of RNT-1 in
C. elegans |
poster |
|
Li, H. |
Dynamics and design principles of a
basic regulatory architecture controlling metabolic
pathways |
talk |
|
Li, X. |
Computational identification of protein
binding elements in 3'UTRs of mRNAs |
poster |
|
Litvin, O. |
Golph—Identifying multi-locus iQTLs |
poster |
|
Liu, X. |
Analysis of ChIP-Seq data elucidates
genome-wide human epigenetic regulation at the
nucleosome level |
talk |
|
Loring, J.F. |
Essential pluripotence—Identification of
common core networks defining pluripotent cells |
talk |
|
Lu, X. |
MatrixREDUCE—A software package for
biophysical modeling of transcriptional networks |
poster |
|
Mann, I. |
DNA-binding sequence specifities of
AT-Rich interaction domains |
poster |
|
Margaritis, A. |
Gene-specific dye bias correction for
two-color microarrays |
poster |
|
Martinez, N.J. |
An integrated genome-scale C. elegans
miRNA-TF network |
talk |
|
Mirny, L. |
Nucleosome-mediated cooperatively of
transcription factors |
poster |
|
Montavon, T. |
Long-range enhancer-promoter
interactions in the HoxD complex |
poster |
|
Morris, Q.D. |
The evolution of gene expression in
vertebrates |
poster |
|
Mortazavi, A. |
RNAseq—Ultra-high-throughput sequencing
of the transcriptome |
poster |
|
Mousavi, K. |
Role of the polycomb protein, Ezh1, in
terminal differentiation |
poster |
|
Mueller, J. |
HIF-dependent transcriptional networks—A
genome wide location analysis |
poster |
|
Murray, J.I. |
Imaging C. elegans developmental
expression |
poster |
|
Mustroph, A. |
The analysis of organ and cell-type
specific mRNA populations of A. thaliana exposes
a global and cell specific response to hypoxia |
poster |
|
Nakazato, T. |
Functional analysis of groups of genes
with MeSH hierarchy |
poster |
|
Neto, A.M. |
Role of Odd-skipped family genes
in the pronephros specification |
poster |
|
Nielsen, F.G. |
Signal-to-noise optimized
oligonucleotide array design |
poster |
|
Noyes, M.B. |
A comprehensive catalog of homeodomain
DNA-binding specificities from D. melanogaster |
poster |
|
Odom, D.. |
Determinants of tissue-specific
transcriptional regulation in a mouse-human hybrid mouse |
talk |
|
Park, J. |
Analysis of microRNA and transcription
factor regulatory modules in myogenesis, cardiogenesis,
and cardiac hypertrophy |
poster |
|
Penalva, L.O. |
A multi-step approach to dissect the
gene network regulated by Musashi1 and its link to
tumorigenesis |
poster |
|
Penalva, L.O. |
Over-represented sequences located on
UTRs are potentially involved in regulatory functions |
poster |
|
Peng, W. |
Statistical analysis of ChIP-Seq data |
poster |
|
Perez, J.C. |
Functional evolution of the PhoP
transcriptional network in enteric bacteria |
poster |
|
Popescu, S.C. |
MAPK signaling networks in A.
thaliana |
poster |
|
Rach, E. |
Alternative transcription start
sites—Core promoter motifs and distinct spatiotemporal
utilization |
poster |
|
Radonjic, M. |
Genome-wide mRNA expression analysis of
high-fat induced hepatic pathophysiology in ApoE3*L mice |
poster |
|
Raveh-Sadka, T. |
From sequence to expression in
Drosophila segmentation—Model and analysis |
poster |
|
Ray, D. |
A new microarray-based system for the
rapid identification of RNA sequence and structure
preferences of RNA binding proteins |
talk |
|
RIBES, V.C. |
Modulation of gene-regulatory network in
the neural tube by the morphogene Sonic Hedgehog |
poster |
|
Ronaghi, M. |
A new search paradigm for large-scale
biological data |
poster |
|
Rosenfeld, J.A. |
Distinct histone modifications are
enriched in non-genic and silent regions of the human
genome |
poster |
|
Rossetti, S. |
Retinoic acid receptor
a ---A node connecting major
tumor suppressor pathways |
poster |
|
Rynditch, A.V. |
Regulation of functional diversity of
adaptor proteins—Family of intersectins |
poster |
|
Sandberg, R. |
Widespread evasion of
posttranscriptional regulation associated with
proliferation |
poster |
|
Sarkar, S. |
HDAC inhibitors reduce CpG methylation
in DNA and induce re-expression of genes silenced by
methylation in prostate cancer cells |
poster |
|
Schroeder, M. |
How to make stripes—Deciphering the
transition from aperiodic to periodic patterns in
Drosophila segmentation |
poster |
|
Shannon, M. |
Epigenetic control of inducible gene
expression in immune cells |
poster |
|
Sharov, A.A. |
Pou5f1, Sox2, and Nanog directly
activate promoters of downstream targets whereas
suppression effect is indirect |
poster |
|
Shay, T.. |
DNA—The quantity is not all that counts |
poster |
|
SHIN, S. |
A novel gonad-specific gene DD2-2
involved in early zygotic gene activation (ZGA) in mouse
preimplantation embryos |
poster |
|
shukla, j.n. |
Isolation and characterization of
sex-specific transcripts of doublesex gene from
wild silkmoth, A. assama |
poster |
|
Simon, I. |
A genome-wide transcriptional analysis
of the human cell cycle identifies genes differentially
regulated in normal and cancer cells |
poster |
|
Sinha, S. |
Evolutionary analysis of cis-regulatory
modules in Drosophila |
poster |
|
Sinha, S. |
Predicting cis-regulatory modules
without motif knowledge |
poster |
|
Smirnova, A.S. |
Overexpression of KBTBD9 intronic
transcripts affects global gene expression profile and
proliferation rate of human cells |
poster |
|
Som, I. |
Developmental stage regulation of the
murine b -globin locus |
poster |
|
Stamatoyannopoulos, J.A. |
Multi-lineage programming of human
regulatory DNA |
talk |
|
Stansberg, C. |
Gene expression in the rat brain—High
similarity but unique differences between frontal,
temporal and occipital cortex |
poster |
|
Stark, A. |
Functionality of microRNA star arms and
anti-sense microRNAs in Drosophila |
talk |
|
sun, X. |
Automatic inference of biological
networks governing cell differentiation |
poster |
|
Tan, W. |
Expression of aquaporins in the salt
glands of a mangrove species A. officinalis |
poster |
|
Tarcic, G. |
From input to output—EGF induced
cellular program in mammary cell migration |
poster |
|
Tillo, D. |
High-resolution atlases of nucleosome
occupancy and transcription—Mutants and small molecules |
talk |
|
Tokoro, M. |
Proteome analysis of mouse
preimplantation embryos |
poster |
|
Troyanskaya, O. |
Computationally driven experimental
discovery of novel mitochondrial biology |
talk |
|
Tsutsumi, S. |
A global map of p53-binding sites in the
human genome |
poster |
|
van Bakel, H. |
Comparative transcriptomics in mammals |
poster |
|
Van Steensel, B. |
Mapping of genome-nuclear lamina
interactions reveals domain structure of human
chromosomes |
talk |
|
Wan, Y.Y. |
The histone variant H2A.Z is required
for fatty acid induction and peroxisome biogenesis |
poster |
|
Wang, J. |
Quantitative model for inferring dynamic
regulation of the tumor suppressor gene p53 |
poster |
|
Wang, T. |
Species-specific mobile elements shape
transcriptional regulatory networks |
talk |
|
Wang, W. |
Prediction of promoters and enhancers
using chromatin modification patterns |
poster |
|
Wei, G. |
Genome-wide characterization of ETS
transcription factor binding specificities and target
genes |
talk |
|
White, M. |
Discovering novel transcriptional
regulators of the yeast cell cycle |
poster |
|
Whittle, C.M. |
The genomic distribution and function of
histone variant H2A.Z during C. elegans
development |
talk |
|
Wickens, M. |
Regulation of mRNAs—PUFs, Paps, and
poly(A) |
talk |
|
Wold, B.J. |
Transcriptome input and output—Combined
RNASeq and ChIPSeq studies |
talk |
|
Wolfe, S. |
A systematic characterization of
Drosophila transcription factors via a bacterial
one-hybrid system |
talk |
|
Wu, J. |
Transcriptional regulation underlying
the mouse EML hematopoietic precursor cell self-renewal
and differentiation |
poster |
|
Wunderlich, Z. |
Information theoretic analysis of
binding motifs and combinatorial regulation |
poster |
|
Xie, X. |
Single molecule approach to molecular
biology in living bacterial cells |
talk |
|
Yao, J. |
Shrinkage error model for cluster
analysis of genome-wide expression data |
poster |
|
Yu, J. |
Molecular cross-talk of androgen
receptor and TMPRSS2:ERG fusion in prostate cancer |
poster |
|
Zhang, C.. |
An RNA landscape of evolution for
optimal exon and intron discrimination |
poster |
|
Zhang, M. |
A tale of hunting down after Pumilio |
talk |
|
Zheng, J. |
Meta-analysis to identify gene
regulatory network in metastatic cancer |
poster |
|
Zheng, J. |
Quantitative genetic interaction mapping
reveals the functional organization of transcriptional
networks |
talk |
|
Zheng, Y. |
The identification of HOX11 target genes
and their transcription networks |
poster |
|
Zhu, Q. |
Complex organizational structure of the
genome revealed by genome-wide analysis of single and
alternative promoters in D. melanogaster |
poster |
