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Infectious Disease:
A Challenge for Biomedical Informatics
September 21, 2007

Organizers:
Lindsay Cowell, Duke University Medical Center
Barry Smith, University at Buffalo

We are pleased to host a new meeting, Infectious Disease: A Challenge for Biomedical Informatics, to be held on Friday, September 21, 2007 from 9:00am to 6:00pm. This meeting will highlight current areas of significant interest in infectious disease research, focusing on the immunobiology of HIV, tuberculosis, and malaria, and on the ways in which ontology as a new paradigm to foster data integration in biomedical informatics can address some of the persistent challenges in infectious disease research. Four of the meeting's six talks will emphasize biological issues, while the remaining two talks and the closing session will demonstrate the use of ontology to advance infectious disease research. The meeting is designed to provide an overview of important developments in infectious disease resarch and pointers towards new developments in infectious disease informatics. Meeting attendees are not expected to have any background in ontology or informatics.

This meeting follows a two-day Workshop on Infectious Disease Ontology designed to train infectious disease researchers and informaticians in the principles of ontology development. Individuals interested in attending the full three days may apply for full tuition and travel scholarships. More information about funding can be found here.

Speakers will include:
Michael Ashburner, University of Cambridge
Dr. Ashburner is Professor of Biology in the Department of Genetics. He has contributed significantly to the field of biomedical ontology, primarily through his leadership role in both the Gene Ontology Consortium and the Open Biological Ontologies Project.
Steven Gordon, Cleveland Clinic
Dr. Gordon is Chairman of the Department of Infectious Diseases in the Cleveland Clinic's Division of Medicine with a long-term interest in the prevention and treatment of transplant infectious diseases, cardiothoracic infections, and healthcare associated infections. His work embraces the development and evaluation of innovative infectious disease diagnostics, including the planned development of an infectious disease ontology covering infections problematic in surgical contexts.
Stefan Kaufmann, Max Planck Institute for Infection Biology, Germany
Dr. Kaufmann is Director of the Department of Immunology at the Max Planck Institute for Infection Biology in Berlin and Professor of Microbiology and Immunology at the Charité, Humboldt University, Berlin. Dr. Kaufmann has made significant contributions towards our understanding of immunity to bacterial pathogens resulting in advances in the development of a tuberculosis vaccine. Dr. Kaufmann's research has focuses specifically in the following areas: tuberculosis gene expression at different sites within the lung, biomarkers for discrimination between latent infection and active disease, and the role of T cells, especially regulatory T cells, in the immune response to tuberculosis.
Ronald Veazey,
Tulane University
Dr. Veazey is Professor of Pathology and Chair of the Division of Comparative Pathology for the Tulane National Primate Research Center. His research on SIV in non-human primates has made significant contributions to our understanding of HIV transmissibility and pathogenesis. His seminal work demonstrating that early events in viral transmission and replication occur primarily in the intestinal and vaginal mucosa has led to a shift in focus in HIV research from blood to mucosal immunity and has led to significant efforts to develop topical microbicides.

Schedule
8.30-9.00 Registration and Coffee / Continental Breakfast
9.00-9.05 Introduction and Welcome (Barry Smith and Lindsay Cowell)

Session I: Topics in Infectious Disease Research
9:05 to 10:15 Stefan Kaufmann: Global Threats Need Global Research Efforts: The Example of Tuberculosis
10:15 to 11:15 Ron Veazey: Utility of nonhuman primates for examining transmission and pathogenesis of HIV infection
11:15 to 11:30 coffee break

Session II: Ontologies and their Application to Infectious Disease
11:30 to 12:30 Steve Gordon: Surgical Endocarditis: Bringing Ontology into the Operating Room
12:30 to 1:30 lunch
1:30 to 2:45 Michael Ashburner: Ontologies for Biomedicine: The GO experience
2:45 to 3:00 break

Session III: Panel Session - Ontology and the Future of Infectious Disease Research
3:00 to 4:30
Lindsay Cowell, Duke University Medical Center
Richard Scheuermann, University of Texas Southwestern Medical Center
Barry Smith, University at Buffalo
Lincoln Stein, Cold Spring Harbor Laboratory

This meeting is supported by The Burroughs Wellcome Fund.



Pricing
Academic Package $150
Student Package $100
Corporate Package $295

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Packages are all inclusive and cover registration, parking, refreshments, lunch and dinner. Full payment is due 4 weeks prior to the meeting.

 

Cold Spring Harbor Laboratory
Meetings & Courses Program
PO Box 100, 1 Bungtown Road
Cold Spring Harbor, NY 11724-2213
Phone (516) 367-8346
Fax: (516) 367-8845

meetings@cshl.edu